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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF252 and GFF253 are separated by 84 nucleotides
GFF253 and GFF254 are separated by 31 nucleotides
GFF254 and GFF255 are separated by 40 nucleotides
GFF255 and GFF256 are separated by 65 nucleotides
GFF252 - Zinc-type alcohol dehydrogenase-like protein, at 283,727 to 284,743
GFF252
GFF253 - Transcriptional regulator, LysR family, at 284,828 to 285,727
GFF253
GFF254 - N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17), type 2, at 285,759 to 286,979
GFF254
GFF255 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 287,020 to 287,853
GFF255
GFF256 - Twitching motility protein PilT, at 287,919 to 289,067
GFF256
Group
Condition
GFF252
GFF253
GFF254
GFF255
GFF256
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.3
-0.7
-3.9
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
+0.3
-0.7
-3.8
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.2
-0.6
-3.6
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-0.1
-0.9
-2.9
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
+0.1
-0.7
-3.8
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
+0.1
-0.3
-3.8
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
+0.2
-0.5
-3.9
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.0
-0.5
-3.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.1
-0.6
-3.5
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.1
+0.1
-0.7
-3.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
+0.2
-0.3
-3.6
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.1
-0.5
-3.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.1
-0.6
-3.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.3
+0.2
-0.5
-3.4
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.1
-0.8
-2.9
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.1
-0.4
-3.4
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.2
-0.4
-3.3
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.3
-0.4
-3.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.1
-0.6
-3.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.0
+0.0
-0.2
-3.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
+0.3
-0.7
-2.9
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
+0.2
-0.4
-3.1
+0.1
phage
phage_bap4
+0.0
-0.0
+0.0
-2.9
-0.2
no phage control
no phage control
-0.1
+0.0
-0.1
-3.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
+0.1
-0.4
-3.0
+0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.1
-1.0
-2.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.4
+0.2
-0.7
-2.9
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.4
-0.6
-2.5
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
+0.2
-0.5
-2.4
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
+0.3
-0.6
-2.0
+0.1
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