Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12930	PS417_12935	PS417_12940	PS417_12945	PS417_12950
phage	P. simiae Grant Run MOI 10	-0.1	-1.4	-1.0	-0.6	N.D.
seeds	Growth on radish seeds for 72 hours	-0.8	-2.4	-0.1	+0.2	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.2	-0.6	-0.1	-0.7	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	-1.2	-0.3	-1.4	N.D.
soil	soil sample 7; outgrowth in LB	+0.0	-2.1	+0.0	-0.4	N.D.
soil	soil sample 6; outgrowth in LB	-0.5	-1.0	-0.3	-0.4	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	-1.0	-0.3	-0.3	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.8	-0.8	+0.1	N.D.
seeds	Growth on radish seeds for 72 hours	-1.0	+0.8	-0.5	-1.1	N.D.
phage	P. simiae Grant Run MOI 10	+0.4	-0.8	-0.7	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	-1.1	-0.4	+0.6	N.D.
phage	P. simiae ORA MOI 10	+0.4	-0.4	-0.7	-0.5	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-1.7	+0.5	-0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.4	-0.8	-0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	+0.7	-0.4	-0.5	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+0.6	-0.4	-0.8	N.D.
carbon source	L-Valine (C)	-1.1	-0.3	+0.6	+0.5	N.D.
phage	JP1 MOI 1	-0.2	+0.9	-0.4	-0.6	N.D.
carbon source	D-Galacturonic Acid (C)	-0.1	-0.8	+0.3	+0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.4	+0.9	-0.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	-0.7	+0.2	+0.6	N.D.
carbon source	L-Valine (C)	+0.8	+0.6	-0.2	-0.6	N.D.
seeds	Growth on radish seeds for 72 hours	-0.2	+0.7	+0.6	-0.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.5	+0.6	+1.1	N.D.
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.8	+0.4	+0.3	-0.5	N.D.
phage	JP1 MOI 10	+0.3	+0.4	+0.9	-0.5	N.D.
carbon source	2-Deoxy-D-Ribose (C)	+0.7	+0.7	+0.2	-0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	+0.4	+0.5	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.1	+0.7	+1.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	+0.3	+0.4	+0.1	N.D.