Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12915	PS417_12920	PS417_12925	PS417_12930	PS417_12935
seeds	Growth on radish seeds for 72 hours	+0.1	-0.5	-0.7	-0.8	-2.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.1	-0.2	-0.3	+0.4	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+0.1	-0.2	-0.5	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.8	+0.3	+0.3	-0.8
r2a control	R2A control	+0.2	-0.2	-0.2	-0.7	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.6	-0.3	-0.1	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.1	-0.3	+0.2	-1.7
phage	P. simiae Grant Run MOI 10	-0.1	+0.4	-0.2	-0.1	-1.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.2	+1.1	-0.7	-1.2	-0.6
seeds	Growth on radish seeds for 72 hours	-0.4	-0.0	-0.6	-1.0	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	+0.0	+0.7	-0.5	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.5	-0.0	-0.5	+0.7
soil	soil sample 6; outgrowth in LB	-0.6	+0.7	+0.6	-0.5	-1.0
soil	soil sample 7; outgrowth in LB	+0.4	+0.8	+0.1	+0.0	-2.1
carbon source	L-Valine (C)	-0.1	+0.3	+0.8	-1.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.2	-0.5	+0.6	+0.6
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	+0.5	-0.0	-0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.2	-0.3	+0.1	+0.9
root	root sample 6; outgrowth in LB	+0.1	+1.1	-0.6	-0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.3	+0.3	+0.3	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.9	+0.3	+0.3	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.3	+0.5	-0.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.0	+0.6	+0.7	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2	+0.5	+0.0	+0.7	+0.4
carbon source	L-Asparagine (C)	+0.4	-0.3	-0.4	-0.1	+0.9
carbon source	2-Deoxy-D-Ribose (C)	+0.2	-0.0	-0.7	+0.7	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.0	+1.5	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.5	+0.6	-0.2	-0.2	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.5	+1.1	+0.2	+0.5	+0.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.6	+0.6	+0.4	-0.4	+0.2