Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12890 and PS417_12895 are separated by 191 nucleotidesPS417_12895 and PS417_12900 are separated by 77 nucleotidesPS417_12900 and PS417_12905 are separated by 100 nucleotidesPS417_12905 and PS417_12910 are separated by 286 nucleotides PS417_12890: PS417_12890 - methyltransferase, at 2,818,630 to 2,819,544 _12890 PS417_12895: PS417_12895 - pyruvate dehydrogenase, at 2,819,736 to 2,822,402 _12895 PS417_12900: PS417_12900 - Fe-S protein, at 2,822,480 to 2,822,968 _12900 PS417_12905: PS417_12905 - ribonucleotide-diphosphate reductase subunit beta, at 2,823,069 to 2,824,319 _12905 PS417_12910: PS417_12910 - alanine racemase, at 2,824,606 to 2,825,703 _12910
Group Condition PS417_12890 PS417_12895 PS417_12900 PS417_12905 PS417_12910
phage JP1 MOI 10 -0.5 -0.4 -0.3 N.D. -1.3
phage moi 100 Time6-phageFRS +0.1 -0.1 -0.5 N.D. -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.1 -0.6 N.D. -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.5 -0.4 N.D. -1.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.4 -0.1 -1.0 N.D. -0.5
carbon source Carbon source L-Ornithine 5 mM +0.1 -0.0 -0.3 N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.1 -0.0 -0.7 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 +0.0 -0.4 N.D. -0.7
carbon source Carbon source D-Mannitol 5 mM -0.7 -0.0 -0.0 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 -0.0 -0.3 N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.2 -0.7 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 +0.1 -0.7 N.D. -0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.8 -0.2 +0.2 N.D. -0.7
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 +0.1 -0.7 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 +0.2 -1.0 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 +0.0 +0.3 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.7 -0.4 N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 +0.4 -0.4 N.D. -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 -0.1 +0.1 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +1.6 -0.3 N.D. -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 +0.0 +0.4 N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 +0.1 -0.3 N.D. +0.2
stress Gentamicin 0.008 mg/ml -0.8 -0.0 +1.0 N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 +1.8 -0.5 N.D. -0.0
carbon source L-Valine (C) -0.0 +2.7 -0.1 N.D. -1.3
root root sample 6; outgrowth in LB +0.3 -0.0 +1.3 N.D. +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +0.0 +0.1 N.D. +0.9
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.2 +0.1 +1.0 N.D. +0.5
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.5 +0.1 +1.0 N.D. +0.3
carbon source L-Valine (C) +0.2 +3.4 -0.7 N.D. -1.0
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