Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12880	PS417_12885	PS417_12890	PS417_12895	PS417_12900
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	-0.2	-0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.6	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.4	-0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-0.7	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.4	-0.7	-0.4
liquid stress	Fraxetin 2 mM; liquid stress	N.D.	+0.0	-0.5	+0.0	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.0	-0.2	+0.2	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.7	-0.4	-0.1	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.4	-1.2	+0.1	-0.0
phage	JP1 MOI 10	N.D.	+0.4	-0.5	-0.4	-0.3
phage	P. simiae ORA MOI 0.1	N.D.	+0.2	-0.5	+0.1	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.4	-0.3	-0.1	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.4	-0.8	-0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.6	-0.5	+0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-0.2	+0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.1	-0.2	-0.6
stress	Gentamicin 0.008 mg/ml	N.D.	-0.3	-0.8	-0.0	+1.0
phage	P. simiae OR Antrim MOI 0.1	N.D.	+0.4	+0.3	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.2	+0.8	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.2	+0.5	-0.1	+0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	+0.2	+0.3	-0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.7	-0.3	+0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.0	-0.3	+1.6	-0.3
root	root sample 6; outgrowth in LB	N.D.	-0.2	+0.3	-0.0	+1.3
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	+0.1	+0.4	+0.1	+0.8
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	N.D.	-0.2	+0.5	+0.1	+1.0
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	N.D.	+0.1	+0.2	+0.1	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-0.0	+1.8	-0.5
carbon source	L-Valine (C)	N.D.	-0.2	-0.0	+2.7	-0.1
carbon source	L-Valine (C)	N.D.	-0.1	+0.2	+3.4	-0.7