Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12875 and PS417_12880 overlap by 33 nucleotidesPS417_12880 and PS417_12885 are separated by 176 nucleotidesPS417_12885 and PS417_12890 are separated by 149 nucleotidesPS417_12890 and PS417_12895 are separated by 191 nucleotides PS417_12875: PS417_12875 - NADH pyrophosphatase, at 2,816,004 to 2,816,837 _12875 PS417_12880: PS417_12880 - membrane protein, at 2,816,805 to 2,817,584 _12880 PS417_12885: PS417_12885 - phosphatidylcholine synthase, at 2,817,761 to 2,818,480 _12885 PS417_12890: PS417_12890 - methyltransferase, at 2,818,630 to 2,819,544 _12890 PS417_12895: PS417_12895 - pyruvate dehydrogenase, at 2,819,736 to 2,822,402 _12895
Group Condition PS417_12875 PS417_12880 PS417_12885 PS417_12890 PS417_12895
soil soil sample 5; outgrowth in LB -0.9 N.D. -0.3 -0.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. -0.5 -0.7 +0.1
stress Gentamicin 0.008 mg/ml -0.2 N.D. -0.3 -0.8 -0.0
supernatant control Vogels_fungal_media 0.1X -0.4 N.D. -0.2 -0.7 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. -0.8 -0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 N.D. -0.4 -0.6 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 N.D. +0.4 -1.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. -0.8 +0.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. +0.3 -0.4 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.3 -0.6 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.1 N.D. +0.4 -0.8 -0.2
phage JP1 MOI 10 +0.2 N.D. +0.4 -0.5 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.3 N.D. +0.2 -0.3 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 N.D. +0.6 -0.5 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 N.D. +0.2 -0.5 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.0 N.D. +0.7 -0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 N.D. +0.5 -0.3 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.4 N.D. +0.4 -0.3 -0.1
rhizosphere rhizosphere sample 8; outgrowth in LB -0.1 N.D. +0.3 +0.5 -0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 N.D. -0.3 +0.8 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 N.D. +0.4 -0.3 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 N.D. +0.7 -0.3 +0.1
phage P. simiae Grant Run MOI 0.1 -0.1 N.D. +0.3 +0.7 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.6 N.D. +0.3 -0.3 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. -0.0 -0.3 +1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 N.D. +0.5 +0.2 +0.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 N.D. -0.2 +0.8 +0.1
carbon source L-Valine (C) -0.3 N.D. -0.2 -0.0 +2.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 N.D. +0.5 -0.0 +1.8
carbon source L-Valine (C) -0.5 N.D. -0.1 +0.2 +3.4
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