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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_12855 and PS417_12860 are separated by 186 nucleotides
PS417_12860 and PS417_12865 are separated by 97 nucleotides
PS417_12865 and PS417_12870 are separated by 192 nucleotides
PS417_12870 and PS417_12875 are separated by 5 nucleotides
PS417_12855: PS417_12855 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,811,651 to 2,812,907
_12855
PS417_12860: PS417_12860 - hypothetical protein, at 2,813,094 to 2,813,648
_12860
PS417_12865: PS417_12865 - chloride channel protein, at 2,813,746 to 2,814,993
_12865
PS417_12870: PS417_12870 - enoyl-CoA hydratase, at 2,815,186 to 2,815,998
_12870
PS417_12875: PS417_12875 - NADH pyrophosphatase, at 2,816,004 to 2,816,837
_12875
Group
Condition
PS417
_12855
PS417
_12860
PS417
_12865
PS417
_12870
PS417
_12875
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.5
N.D.
-0.4
-1.4
-0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.6
N.D.
+0.1
-1.7
-0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.4
N.D.
+0.3
-2.3
+0.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.8
N.D.
-0.1
-1.1
+0.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.9
N.D.
-0.4
-0.2
-0.4
carbon source
Glycerol (C)
-4.6
N.D.
+0.0
-1.8
-0.1
carbon source
Inosine (C)
-5.6
N.D.
+0.1
-0.6
-0.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.5
N.D.
+0.3
-1.4
+0.4
carbon source
D-Gluconic Acid (C)
-5.4
N.D.
+0.3
-0.9
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.6
N.D.
-0.2
+0.2
-0.6
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.8
N.D.
+0.1
-0.5
+0.0
carbon source
NAG (C)
-5.8
N.D.
+0.1
-0.2
-0.1
carbon source
D-Alanine (C)
-5.2
N.D.
-0.1
-0.5
-0.1
carbon source
D-Trehalose (C)
-5.2
N.D.
-0.0
-0.5
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.9
N.D.
+0.0
+0.1
-0.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
-4.7
N.D.
-0.1
-1.1
+0.2
carbon source
NAG (C)
-5.8
N.D.
-0.1
+0.3
-0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.3
N.D.
-0.1
-0.2
-0.1
carbon source
L-Leucine (C)
-5.1
N.D.
+0.0
-0.2
-0.3
carbon source
L-Lactate (C)
-4.8
N.D.
+0.1
-0.7
-0.1
carbon source
octanoate (C)
-5.1
N.D.
+0.1
-0.5
+0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.7
N.D.
+0.2
+0.3
+0.2
carbon source
Inosine (C)
-5.0
N.D.
+0.2
+0.1
-0.4
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
-5.4
N.D.
+0.1
+0.3
-0.1
carbon source
L-Valine (C)
-5.0
N.D.
+0.3
-0.0
-0.3
nitrogen source
Adenine (N)
-5.2
N.D.
+0.1
+0.4
-0.1
carbon source
D-Fructose (C)
-5.0
N.D.
-0.2
+0.1
+0.2
nitrogen source
Putrescine (N)
-5.8
N.D.
+0.2
+0.7
+0.1
nitrogen source
Adenosine (N)
-4.9
N.D.
+0.2
+0.7
+0.1
nitrogen source
Urea (N)
-4.5
N.D.
+0.3
+0.9
+0.0
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