Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12820	PS417_12825	PS417_12830	PS417_12835	PS417_12840
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-1.1	-0.9	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.1	+0.3	+0.2	-3.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.2	-0.3	+0.4	-2.5
phage	P. simiae Grant Run MOI 0.1	-0.7	-0.1	+0.2	-0.2	-1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+0.2	-0.4	+0.3	-2.1
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.0	-0.1	+0.2	-1.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.1	-0.1	+0.2	-1.8
stress	methylglyoxal 0.032 vol%	-0.2	-0.8	+0.4	-0.2	-0.8
stress	Chloramphenicol 0.015 mg/ml	-0.4	+0.1	+0.4	-0.3	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.5	+0.3	+0.1	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.4	-0.7	+0.2	-0.2
soil	soil sample 6; outgrowth in LB	-1.0	+1.0	+0.0	-0.2	-0.7
carbon source	L-Valine (C)	+0.8	-0.3	-0.9	+0.3	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0	+0.5	-0.2	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.3	+0.3	+0.3	-1.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	+1.3	+0.2	-1.1	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.3	+0.7	+0.3	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	+0.7	+0.5	-0.0	-0.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.0	+1.4	+0.0	-0.3	-1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-0.4	+0.7	+0.4	-1.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	+0.2	+0.1	-0.3	+0.8
soil	soil sample 3; outgrowth in LB	-0.1	+0.8	+0.4	-0.2	-0.7
soil	soil sample 2; outgrowth in LB	+0.3	+0.8	+0.1	-0.1	-0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	+1.3	+0.4	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.4	+0.3	-0.0	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.9	+0.4	+0.4	-0.0
seeds	Growth on radish seeds for 72 hours	-0.6	+0.2	+0.0	+0.4	+1.2
root	root sample 6; outgrowth in LB	+0.1	+1.3	+0.2	+0.6	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.9	+0.2	+0.5	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.9	+0.7	+0.4	+0.6