Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01270	PS417_01275	PS417_01280	PS417_01285	PS417_01290
soil	soil sample 5; outgrowth in LB	+0.3	-0.3	-1.4	-4.2	+0.1
solid stress	Fraxetin 2 mM; solid stress	-4.7	-0.5	-0.1	-0.1	+0.5
phage	P. simiae Grant Run MOI 0.1	-1.3	+0.1	-0.7	+0.2	-2.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.3	+0.4	-0.5	-2.6
solid stress	Fraxetin 3 mM; solid stress	-1.6	-0.9	-0.0	-0.3	-1.1
solid stress	Fraxetin 3 mM; solid stress	-1.2	-1.6	-0.4	+0.5	-1.2
carbon source	octanoate (C)	-0.9	-0.5	-0.5	-0.1	-1.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.6	-1.0	-0.7	-1.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	-0.3	+0.1	-0.4	-1.7
stress	Gentamicin 0.008 mg/ml	-1.8	+0.0	+1.0	-0.9	-1.0
phage	P. simiae ORA MOI 10	+0.5	-0.4	-0.6	-0.4	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.2	+0.8	-1.8	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-0.6	+0.4	+0.3	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.0	-0.4	+1.1	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.1	+0.6	+1.4	-3.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.9	+0.7	-1.4	+1.1
motility	inner cut, LB soft agar motility assay	+0.1	-0.1	+0.1	+1.2	-2.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.9	-1.0	-0.2	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+0.3	+0.3	-1.5	+1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	-0.6	+0.2	+1.4	-1.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	-0.3	+1.9	-0.4	-0.2
phage	P. simiae OR1 MOI 0.1	-0.4	-0.5	-0.5	+0.4	+2.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.8	-0.0	-0.1	+0.0	-1.4
stress	Neomycin 0.04 mg/ml	-0.4	-0.3	+0.4	-0.4	+2.1
agar plate interaction control	Taped volatile agar plate with no fungus	+0.7	-0.5	+1.4	-1.3	+1.1
phage	Wcs_1	-0.1	+0.0	-0.9	+0.9	+1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.1	+0.8	+1.7	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.8	+0.3	+0.2	+2.2
carbon source	L-Valine (C)	+1.6	+0.6	+0.9	-0.9	+1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+8.0	+0.5	+0.2	-0.5	-2.9