Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12775	PS417_12780	PS417_12785	PS417_12790	PS417_12795
seeds	Growth on radish seeds for 72 hours	-0.2	-1.0	-0.7	N.D.	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.4	-0.8	+0.0	N.D.	-1.0
soil	soil sample 5; outgrowth in LB	-0.3	+0.3	-0.2	N.D.	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.0	-0.5	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.7	-0.4	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	-0.2	+0.1	N.D.	-0.2
motility	inner cut, LB soft agar motility assay	-0.3	-1.4	-0.2	N.D.	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	-0.1	-0.4	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	-0.4	+0.3	N.D.	-0.7
solid stress	Fraxetin 3 mM; solid stress	-0.3	+0.5	-0.5	N.D.	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.1	+0.1	N.D.	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	+0.4	-0.1	N.D.	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.2	+0.5	-0.1	N.D.	-1.4
soil	soil sample 4; outgrowth in LB	+0.0	-0.1	+0.5	N.D.	-1.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.5	+0.1	N.D.	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.7	-0.4	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	+0.3	+0.4	N.D.	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.4	+0.4	-0.4	N.D.	-0.8
phage	P. simiae OR Antrim MOI 10	+0.8	-0.8	-0.3	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.9	+0.1	N.D.	-0.2
root	root sample 6; outgrowth in LB	-0.1	+0.6	+0.4	N.D.	-1.2
phage	P. simiae Grant Run MOI 0.1	+0.8	-0.1	-0.8	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	+0.7	+0.2	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.2	+1.4	-0.0	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+1.1	+0.2	N.D.	-0.4
phage	JP1 MOI 0.1	+1.3	-0.5	-0.2	N.D.	-0.1
soil	soil sample 3; outgrowth in LB	+0.6	+0.8	+0.3	N.D.	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	+0.7	-0.2	N.D.	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	+0.9	+0.2	N.D.	+0.5
phage	JP1 MOI 1	+0.8	+0.4	+0.4	N.D.	+0.5