Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12770 and PS417_12775 overlap by 4 nucleotidesPS417_12775 and PS417_12780 are separated by 51 nucleotidesPS417_12780 and PS417_12785 are separated by 184 nucleotidesPS417_12785 and PS417_12790 are separated by 120 nucleotides PS417_12770: PS417_12770 - hypothetical protein, at 2,790,193 to 2,790,477 _12770 PS417_12775: PS417_12775 - GntR family transcriptional regulator, at 2,790,474 to 2,791,883 _12775 PS417_12780: PS417_12780 - (Fe-S)-binding protein, at 2,791,935 to 2,793,344 _12780 PS417_12785: PS417_12785 - hypothetical protein, at 2,793,529 to 2,793,768 _12785 PS417_12790: PS417_12790 - methyltransferase, at 2,793,889 to 2,794,380 _12790
Group Condition PS417_12770 PS417_12775 PS417_12780 PS417_12785 PS417_12790
motility inner cut, LB soft agar motility assay N.D. -0.3 -1.4 -0.2 N.D.
seeds Growth on radish seeds for 72 hours N.D. -0.2 -1.0 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.7 -0.2 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.2 +0.0 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.9 -0.5 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.0 -0.1 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.1 -0.1 -0.3 N.D.
stress methylglyoxal 0.032 vol% N.D. -0.5 -0.7 -0.2 N.D.
seeds Growth on radish seeds for 72 hours N.D. -0.1 -1.2 -0.1 N.D.
seeds Growth on radish seeds for 72 hours N.D. -0.6 -0.6 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.1 +0.4 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.0 +0.0 +0.4 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.3 +0.5 -0.5 N.D.
phage P. simiae OR Antrim MOI 10 N.D. +0.8 -0.8 -0.3 N.D.
phage P. simiae ORA MOI 0.1 N.D. +0.4 +0.3 -0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.0 +0.9 +0.1 N.D.
phage P. simiae Grant Run MOI 0.1 N.D. +0.8 -0.1 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.2 +1.4 -0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -0.6 +0.7 +0.2 N.D.
phage P. simiae Grant Run MOI 0.1 N.D. +0.9 -0.3 -0.2 N.D.
phage JP1 MOI 0.1 N.D. +1.3 -0.5 -0.2 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. +0.2 +0.8 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -0.4 +1.1 +0.2 N.D.
phage P. simiae OR Antrim MOI 0.1 N.D. +1.3 -0.2 -0.3 N.D.
phage JP1 MOI 1 N.D. +0.9 -0.2 +0.3 N.D.
phage JP1 MOI 10 N.D. +1.0 +0.3 +0.1 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.3 +0.9 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.1 +0.7 -0.2 N.D.
soil soil sample 3; outgrowth in LB N.D. +0.6 +0.8 +0.3 N.D.
phage JP1 MOI 1 N.D. +0.8 +0.4 +0.4 N.D.
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