Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12755	PS417_12760	PS417_12765	PS417_12770	PS417_12775
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.2	-0.6	N.D.	-0.7
phage	Wcs_1	-0.8	-0.1	-0.6	N.D.	-0.5
seeds	Growth on radish seeds for 72 hours	-1.3	-0.2	-0.2	N.D.	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	-1.8	+0.0	-0.1	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.0	-0.8	N.D.	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.4	-0.4	N.D.	-1.2
stress	Gentamicin 0.008 mg/ml	-1.3	-0.4	-0.4	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	+0.1	-0.4	N.D.	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.2	+0.2	N.D.	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	+0.3	-0.2	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	+0.4	N.D.	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	+1.0	N.D.	-1.7
liquid stress	Fraxetin 3 mM; liquid stress	-1.6	+0.4	+0.2	N.D.	+0.1
supernatant control	Vogels_fungal_media; pH 5.5	-1.2	-0.1	-0.0	N.D.	+0.5
liquid stress	Fraxetin 3 mM; liquid stress	-1.4	+0.1	+0.4	N.D.	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.8	-0.9	N.D.	-0.0
phage	P. simiae Grant Run MOI 0.1	-0.7	+0.3	-0.5	N.D.	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	-0.1	+0.1	N.D.	-1.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.9	+0.4	+0.3	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.0	+0.3	N.D.	-0.8
phage	P. simiae OR Antrim MOI 0.1	-0.2	-0.0	-0.2	N.D.	+1.3
phage	P. simiae OR Antrim MOI 1	-0.6	+0.5	+0.5	N.D.	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+0.1	+1.4	N.D.	-0.5
phage	JP1 MOI 10	-0.5	+0.0	+0.5	N.D.	+1.0
carbon source	L-Valine (C)	+1.2	-0.1	-0.5	N.D.	+0.6
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	+1.0	+0.4	+0.3	N.D.	-0.2
phage	JP1 MOI 10	+0.8	-0.3	-0.1	N.D.	+1.0
phage	JP1 MOI 1	+0.4	-0.0	+0.8	N.D.	+0.8
phage	JP1 MOI 0.1	+0.5	+0.0	+0.3	N.D.	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.4	+0.4	+0.2	N.D.	+0.4