Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12745	PS417_12750	PS417_12755	PS417_12760	PS417_12765
liquid stress	Fraxetin 3 mM; liquid stress	-2.2	-2.5	-1.8	+0.0	-0.1
liquid stress	Fraxetin 3 mM; liquid stress	-1.8	-2.0	-1.4	+0.1	+0.4
liquid stress	Fraxetin 3 mM; liquid stress	-1.8	-1.6	-1.2	-0.2	+0.1
liquid stress	Fraxetin 3 mM; liquid stress	-1.4	-1.7	-1.4	+0.1	+0.3
liquid stress	Fraxetin 3 mM; liquid stress	-1.2	-1.7	-1.6	+0.4	+0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.9	-1.2	-0.9	+0.5	-0.0
stress	Gentamicin 0.008 mg/ml	+0.3	-0.6	-1.3	-0.4	-0.4
seeds	Growth on radish seeds for 72 hours	-0.4	-0.2	-1.3	-0.2	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.6	-0.9	-0.2	-0.3
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.9	-1.0	-0.9	+0.4	+0.3
stress	R2A with Fusaric 120 ug/mL	-0.3	-0.4	-1.1	-0.1	-0.0
solid stress	Fraxetin 2 mM; solid stress	-0.4	-0.5	-1.1	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	-0.1	-0.5	-0.3	-0.5
soil	soil sample 4; outgrowth in LB	-0.4	-0.3	-1.1	+0.0	-0.1
supernatant control	Vogels_fungal_media 0.1X	-0.6	+0.1	-0.9	-0.3	-0.3
solid stress	Fraxetin 3 mM; solid stress	-0.4	-0.9	-0.8	-0.3	+0.5
stress	R2A with Fusaric 120 ug/mL	-0.5	-0.7	-0.9	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-0.1	-1.0	+0.2	+0.0
stress	R2A with Fusaric 120 ug/mL	-0.4	-0.5	-0.7	+0.1	+0.3
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.3	-0.8	+0.3	+0.4
solid stress	Fraxetin 3 mM; solid stress	-0.4	-0.8	-0.3	+0.2	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	-0.7	-0.3	+0.8	-0.9
phage	P. simiae OR1 MOI 0.1	+0.3	-0.3	-0.0	+0.7	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.1	-0.3	-0.2	+1.0
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	-0.6	+0.8	+0.4	+0.2
carbon source	L-Valine (C)	+0.6	+0.4	+1.2	-0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.2	+0.0	+0.1	+1.4
stress	methylglyoxal 0.032 vol%	+0.7	+0.5	+0.5	+0.2	-0.2
stress	Neomycin 0.04 mg/ml	+0.7	+0.5	+0.6	+0.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.2	+1.4	+0.4	+0.2