Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00120	PS417_00125	PS417_00130	PS417_00135	PS417_00140
soil	soil sample 4; outgrowth in LB	N.D.	N.D.	-0.6	-0.3	-0.3
phage	JP1 MOI 1	N.D.	N.D.	-0.8	-0.3	+0.1
carbon source	m-Inositol (C)	N.D.	N.D.	-0.3	-0.7	-0.1
soil	soil sample 3; outgrowth in LB	N.D.	N.D.	-0.3	-0.5	-0.2
carbon source	D-Alanine (C)	N.D.	N.D.	-0.5	-0.3	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.8	-0.0	-0.1
carbon source	D,L-Lactate (C)	N.D.	N.D.	-0.4	-0.4	-0.1
motility	inner cut, LB soft agar motility assay	N.D.	N.D.	-0.4	-0.5	+0.1
soil	soil sample 6; outgrowth in LB	N.D.	N.D.	-0.4	-0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.4	+0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.5	+0.4	-0.4
phage	P. simiae Grant Run MOI 0.1	N.D.	N.D.	-0.5	-0.2	+0.3
soil	soil sample 2; outgrowth in LB	N.D.	N.D.	+0.3	-0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.4	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.4	-0.5	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.4	-0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.6	-0.4	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	N.D.	+0.6	-0.2	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.6	-0.4	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.4	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.7	-0.2	-0.2
stress	1-ethyl-3-methylimidazolium acetate 35 mM	N.D.	N.D.	+0.6	-0.3	+0.0
stress	methylglyoxal 0.032 vol%	N.D.	N.D.	+0.9	-0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.7	-0.3	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.2	+0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.8	+0.0	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.9	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.9	+0.4	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	+1.6	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	+1.5	+0.4	-0.2