Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12735	PS417_12740	PS417_12745	PS417_12750	PS417_12755
liquid stress	Fraxetin 3 mM; liquid stress	-0.4	-1.6	-2.2	-2.5	-1.8
liquid stress	Fraxetin 3 mM; liquid stress	-0.4	-1.9	-1.4	-1.7	-1.4
liquid stress	Fraxetin 3 mM; liquid stress	+0.0	-1.7	-1.8	-1.6	-1.2
liquid stress	Fraxetin 3 mM; liquid stress	-0.2	-1.0	-1.8	-2.0	-1.4
liquid stress	Fraxetin 3 mM; liquid stress	-0.3	-1.0	-1.2	-1.7	-1.6
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.1	-0.7	-0.9	-1.2	-0.9
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.5	-2.1	-0.1	-0.2	-0.5
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.2	-0.4	-0.9	-1.0	-0.9
stress	R2A with Fusaric 120 ug/mL	-0.3	-0.6	-0.3	-0.4	-1.1
stress	R2A with Fusaric 120 ug/mL	-0.4	-0.2	-0.5	-0.7	-0.9
stress	L-Lysine 60 mM	-0.7	-0.8	-0.5	-0.5	-0.2
soil	soil sample 5; outgrowth in LB	+0.2	-1.2	-0.3	-0.1	-0.7
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.6	-0.3	-0.6	-0.9
seeds	Growth on radish seeds for 72 hours	+0.3	-0.4	-0.4	-0.2	-1.3
soil	soil sample 4; outgrowth in LB	+0.6	-0.5	-0.4	-0.3	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-1.0	-0.4	-0.0	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.4	-0.3	-0.3	+0.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	-0.4	-0.7	-0.1	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-1.0	+0.8	-0.5	-0.3	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	-0.5	+0.2	-0.5	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.3	-0.4	-0.3	-0.2	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.5	+0.2	-0.1	+1.0
stress	Gentamicin 0.008 mg/ml	-0.2	+1.1	+0.3	-0.6	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.3	+0.5	-0.1	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	-0.9	-0.4	+0.5	+0.0
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+1.0	+0.1	-0.2	-0.6	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+0.1	+0.2	+0.2	+1.4
stress	methylglyoxal 0.032 vol%	+0.9	-0.5	+0.7	+0.5	+0.5
carbon source	L-Valine (C)	-0.6	+0.6	+0.6	+0.4	+1.2
stress	Neomycin 0.04 mg/ml	+0.4	+0.6	+0.7	+0.5	+0.6