Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12695 and PS417_12700 are separated by 18 nucleotidesPS417_12700 and PS417_12705 are separated by 22 nucleotidesPS417_12705 and PS417_12710 are separated by 10 nucleotidesPS417_12710 and PS417_12715 are separated by 177 nucleotides PS417_12695: PS417_12695 - mannitol dehydrogenase, at 2,762,097 to 2,763,578 _12695 PS417_12700: PS417_12700 - ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data), at 2,763,597 to 2,764,700 _12700 PS417_12705: PS417_12705 - ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data), at 2,764,723 to 2,765,553 _12705 PS417_12710: PS417_12710 - ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data), at 2,765,564 to 2,766,457 _12710 PS417_12715: PS417_12715 - ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data), at 2,766,635 to 2,767,957 _12715
Group Condition PS417_12695 PS417_12700 PS417_12705 PS417_12710 PS417_12715
carbon source Carbon source D-Mannitol 5 mM -5.0 -5.1 -3.7 -4.9 -3.7
carbon source D-Sorbitol (C) -4.8 -3.7 -3.5 -5.1 -3.4
carbon source D-Sorbitol (C) -5.0 -3.5 -2.6 -4.3 -3.5
carbon source Carbon source D-Mannitol 5 mM -4.3 -4.1 -3.1 -3.8 -3.4
carbon source Carbon source D-Mannitol 10 mM -3.4 -3.9 -3.4 -3.4 -3.3
carbon source Carbon source D-Mannitol 10 mM -3.2 -2.6 -3.2 -3.7 -3.2
carbon source Carbon source D-Mannitol 2.5 mM -3.0 -2.7 -2.7 -3.6 -2.7
carbon source Carbon source D-Mannitol 2.5 mM -2.8 -2.0 -2.7 -3.7 -2.8
carbon source D-Mannose (C) -3.4 -1.8 -2.2 -2.4 -2.1
carbon source D-Mannose (C) -2.8 -1.7 -2.1 -2.4 -2.1
carbon source Xylitol (C) -2.0 -0.9 -0.7 -1.3 -1.2
carbon source Xylitol (C) -2.0 -0.7 -0.5 -1.3 -1.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -3.7 -0.1 +0.4 -0.4 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -3.9 +0.1 +0.3 +0.0 +0.0
solid stress Fraxetin 3 mM; solid stress -3.2 -0.2 -0.1 +0.3 -0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.1 -0.2 -0.5 -0.4 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 -0.8 +0.1 -0.9 -0.3
soil soil sample 2; outgrowth in LB -2.0 -0.9 -0.9 +0.0 +0.7
soil soil sample 7; outgrowth in LB -2.5 -1.0 -0.5 +0.4 +0.7
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.8 +0.1 +0.0 +0.0 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.9 +0.4 -0.2 +0.4 -0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.8 +0.0 +0.1 +0.3 -0.1
soil soil sample 4; outgrowth in LB -2.2 +0.1 -0.3 +0.3 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -2.4 +0.3 +0.4 +0.5 -0.2
rhizosphere rhizosphere sample 8; outgrowth in LB -1.7 -0.2 -0.3 +0.4 +0.7
solid stress Fraxetin 3 mM; solid stress -2.2 +0.5 +0.4 +0.2 +0.1
carbon source 2'-Deoxyinosine 5 mM (C) -1.4 +0.7 +0.4 -0.6 -0.2
soil soil sample 8; outgrowth in LB -1.3 -0.9 +0.2 +0.4 +0.6
rhizosphere rhizosphere sample 1; outgrowth in LB -1.9 -0.2 -0.2 +0.8 +0.7
root root sample 6; outgrowth in LB -1.4 +0.1 +0.0 +0.9 +0.7
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PS417_12695
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PS417_12700
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PS417_12710
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