Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12685 and PS417_12690 are separated by 12 nucleotidesPS417_12690 and PS417_12695 are separated by 141 nucleotidesPS417_12695 and PS417_12700 are separated by 18 nucleotidesPS417_12700 and PS417_12705 are separated by 22 nucleotides PS417_12685: PS417_12685 - fructokinase, at 2,759,523 to 2,760,461 _12685 PS417_12690: PS417_12690 - xylulose kinase, at 2,760,474 to 2,761,955 _12690 PS417_12695: PS417_12695 - mannitol dehydrogenase, at 2,762,097 to 2,763,578 _12695 PS417_12700: PS417_12700 - ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data), at 2,763,597 to 2,764,700 _12700 PS417_12705: PS417_12705 - ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data), at 2,764,723 to 2,765,553 _12705
Group Condition PS417_12685 PS417_12690 PS417_12695 PS417_12700 PS417_12705
carbon source Carbon source D-Mannitol 5 mM N.D. -3.3 -5.0 -5.1 -3.7
carbon source Carbon source D-Mannitol 5 mM N.D. -5.0 -4.3 -4.1 -3.1
carbon source D-Sorbitol (C) N.D. -3.3 -4.8 -3.7 -3.5
carbon source D-Sorbitol (C) N.D. -3.3 -5.0 -3.5 -2.6
carbon source Carbon source D-Mannitol 10 mM N.D. -3.4 -3.4 -3.9 -3.4
carbon source Carbon source D-Mannitol 2.5 mM N.D. -4.3 -3.0 -2.7 -2.7
carbon source Carbon source D-Mannitol 10 mM N.D. -2.5 -3.2 -2.6 -3.2
carbon source Carbon source D-Mannitol 2.5 mM N.D. -3.3 -2.8 -2.0 -2.7
carbon source D-Mannose (C) N.D. -3.3 -3.4 -1.8 -2.2
carbon source D-Mannose (C) N.D. -2.8 -2.8 -1.7 -2.1
carbon source Xylitol (C) N.D. -5.2 -2.0 -0.9 -0.7
carbon source Xylitol (C) N.D. -4.3 -2.0 -0.7 -0.5
carbon source D-Fructose (C) N.D. -1.9 -2.1 -0.2 -0.1
carbon source D-Xylose (C) N.D. -3.1 -0.5 -0.2 -0.2
soil soil sample 7; outgrowth in LB N.D. +0.1 -2.5 -1.0 -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.9 -2.4 -0.3 -0.1
carbon source D-Fructose (C) N.D. -1.8 -1.7 -0.2 -0.1
solid stress Fraxetin 3 mM; solid stress N.D. -0.2 -3.2 -0.2 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.1 -3.9 +0.1 +0.3
soil soil sample 4; outgrowth in LB N.D. -1.2 -2.2 +0.1 -0.3
soil soil sample 2; outgrowth in LB N.D. +0.3 -2.0 -0.9 -0.9
carbon source D-Xylose (C) N.D. -2.9 -0.1 -0.3 -0.1
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +0.2 -3.7 -0.1 +0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.3 -2.1 -0.2 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.1 -2.9 +0.4 -0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 -2.8 +0.1 +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.0 -2.8 +0.0 +0.1
solid stress Fraxetin 3 mM; solid stress N.D. -0.1 -2.3 +0.4 +0.1
solid stress Fraxetin 3 mM; solid stress N.D. -0.5 -2.2 +0.5 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +0.1 -2.4 +0.3 +0.4
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