Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12655	PS417_12660	PS417_12665	PS417_12670	PS417_12675
carbon source	L-Valine (C)	+0.7	-3.1	-3.2	-1.0	N.D.
carbon source	L-Valine (C)	+0.5	-0.1	-3.3	-0.9	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.3	-0.2	-0.8	N.D.
solid stress	Fraxetin 3 mM; solid stress	-1.3	-1.0	+0.2	-0.1	N.D.
soil	soil sample 8; outgrowth in LB	-0.3	-1.5	-0.1	-0.2	N.D.
solid stress	Fraxetin 2 mM; solid stress	-1.4	-0.8	+0.2	-0.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	-1.8	-0.1	+0.2	N.D.
root	root sample 6; outgrowth in LB	-0.0	-1.9	+0.5	-0.5	N.D.
soil	soil sample 2; outgrowth in LB	+0.3	-1.4	-0.0	-0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.2	-1.5	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-1.5	-0.1	-0.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.2	-1.7	+0.2	N.D.
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.5	-1.4	-0.4	-0.2	N.D.
solid stress	Fraxetin 3 mM; solid stress	-1.6	+0.5	+0.2	-0.6	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	-1.6	-0.2	+0.1	N.D.
soil	soil sample 5; outgrowth in LB	-0.2	-1.9	+0.4	+0.5	N.D.
motility	inner cut, LB soft agar motility assay	+0.2	-1.7	+0.1	+0.5	N.D.
phage	P. simiae OR Antrim MOI 1	+1.0	-1.2	-0.7	+0.1	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	-1.7	+0.0	+0.6	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-1.0	-0.2	+0.6	N.D.
motility	outer cut, LB soft agar motility assay	+0.7	-0.9	+0.1	+0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.0	-0.1	+1.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+1.6	-0.5	+0.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.9	+0.3	+0.4	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	-0.8	+0.4	+1.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	+1.4	+0.2	-0.0	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	+1.4	-0.2	+0.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+1.3	-0.3	+0.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.2	+0.7	+0.8	+0.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+1.6	+0.2	+0.5	N.D.