Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12610	PS417_12615	PS417_12620	PS417_12625	PS417_12630
carbon source	L-Valine (C)	-0.8	-0.4	-0.4	-0.2	-0.0
phage	JP1 MOI 1	+0.0	-0.8	-0.6	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.5	-0.4	-0.0	+0.3
stress	methylglyoxal 0.032 vol%	-1.3	-0.7	+0.6	+0.5	+0.3
seeds	Growth on radish seeds for 72 hours	+0.3	-1.1	+0.2	+0.4	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.5	+0.5	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+0.0	-0.8	-0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.5	-0.5	-0.2	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.9	-0.3	-0.1	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	-0.3	-0.2	-0.2	-0.2
carbon source	L-Valine (C)	-0.1	-0.2	+1.0	-0.0	-0.3
seeds	Growth on radish seeds for 72 hours	+0.7	-0.1	-0.3	+0.4	-0.3
stress	Gentamicin 0.008 mg/ml	+0.9	+0.0	-0.5	+0.2	+0.1
soil	soil sample 6; outgrowth in LB	+1.5	-0.0	-0.2	+0.0	-0.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	-0.3	+0.4	-0.1	+0.2
soil	soil sample 3; outgrowth in LB	+1.8	-0.6	+0.1	+0.1	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.4	-0.2	+1.0	+0.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	+0.8	-0.4	+0.2	+0.2
soil	soil sample 8; outgrowth in LB	+1.8	-0.5	-0.1	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.3	-0.2	+0.4	-0.1	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.3	+1.3	+0.1	+0.2
soil	soil sample 7; outgrowth in LB	+2.1	-0.1	-0.2	+0.1	-0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+2.3	-0.3	-0.3	+0.1	-0.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	+1.9	-0.5	-0.0	+0.1	+0.3
soil	soil sample 5; outgrowth in LB	+1.7	+0.1	+0.0	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.3	+0.6	-0.1	+0.8
soil	soil sample 4; outgrowth in LB	+1.8	-0.1	+0.0	+0.3	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+2.4	-0.2	+0.2	-0.2	+0.1
soil	soil sample 2; outgrowth in LB	+2.1	+0.0	-0.2	+0.3	+0.5
root	root sample 6; outgrowth in LB	+2.4	-0.1	+1.6	+0.3	-0.1