Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12600 and PS417_12605 are separated by 0 nucleotidesPS417_12605 and PS417_12610 overlap by 4 nucleotidesPS417_12610 and PS417_12615 are separated by 170 nucleotidesPS417_12615 and PS417_12620 are separated by 138 nucleotides PS417_12600: PS417_12600 - histidine kinase, at 2,743,168 to 2,744,469 _12600 PS417_12605: PS417_12605 - RNA polymerase subunit sigma-70, at 2,744,470 to 2,745,138 _12605 PS417_12610: PS417_12610 - RNA polymerase sigma factor, at 2,745,135 to 2,745,650 _12610 PS417_12615: PS417_12615 - hypothetical protein, at 2,745,821 to 2,746,342 _12615 PS417_12620: PS417_12620 - SAM-dependent methyltransferase, at 2,746,481 to 2,747,251 _12620
Group Condition PS417_12600 PS417_12605 PS417_12610 PS417_12615 PS417_12620
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.8 -0.5 -0.4
carbon source L-Valine (C) N.D. N.D. -0.8 -0.4 -0.4
phage JP1 MOI 1 N.D. N.D. +0.0 -0.8 -0.6
stress methylglyoxal 0.032 vol% N.D. N.D. -1.3 -0.7 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 -0.4 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. +0.2 -0.9 -0.3
stress 6-methoxy-2(3H)-benzoxazolone 1.2 mM N.D. N.D. +0.3 -0.5 -0.6
seeds Growth on radish seeds for 72 hours N.D. N.D. +0.3 -1.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. +0.8 +0.0 -0.8
stress Gentamicin 0.008 mg/ml N.D. N.D. +0.9 +0.0 -0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. N.D. +0.9 -0.3 -0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +1.0 -0.3 -0.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. +1.3 -0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +1.0 +0.0 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +0.5 +0.8 -0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.7 -0.3 +0.4
soil soil sample 8; outgrowth in LB N.D. N.D. +1.8 -0.5 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. +0.2 -0.3 +1.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. +0.4 -0.2 +1.0
soil soil sample 3; outgrowth in LB N.D. N.D. +1.8 -0.6 +0.1
soil soil sample 6; outgrowth in LB N.D. N.D. +1.5 -0.0 -0.2
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. N.D. +1.9 -0.5 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +1.3 -0.2 +0.4
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. +2.3 -0.3 -0.3
soil soil sample 7; outgrowth in LB N.D. N.D. +2.1 -0.1 -0.2
soil soil sample 5; outgrowth in LB N.D. N.D. +1.7 +0.1 +0.0
soil soil sample 4; outgrowth in LB N.D. N.D. +1.8 -0.1 +0.0
soil soil sample 2; outgrowth in LB N.D. N.D. +2.1 +0.0 -0.2
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. +2.4 -0.2 +0.2
root root sample 6; outgrowth in LB N.D. N.D. +2.4 -0.1 +1.6
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