Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12590 and PS417_12595 are separated by 287 nucleotidesPS417_12595 and PS417_12600 are separated by 3 nucleotidesPS417_12600 and PS417_12605 are separated by 0 nucleotidesPS417_12605 and PS417_12610 overlap by 4 nucleotides PS417_12590: PS417_12590 - RND transporter, at 2,741,033 to 2,742,175 _12590 PS417_12595: PS417_12595 - transcriptional regulator, at 2,742,463 to 2,743,164 _12595 PS417_12600: PS417_12600 - histidine kinase, at 2,743,168 to 2,744,469 _12600 PS417_12605: PS417_12605 - RNA polymerase subunit sigma-70, at 2,744,470 to 2,745,138 _12605 PS417_12610: PS417_12610 - RNA polymerase sigma factor, at 2,745,135 to 2,745,650 _12610
Group Condition PS417_12590 PS417_12595 PS417_12600 PS417_12605 PS417_12610
stress Tetracycline 0.001 mg/ml N.D. -4.4 N.D. N.D. -0.4
stress Spectinomycin 0.4 mg/ml N.D. -4.7 N.D. N.D. -0.0
stress Doxycycline hyclate 0.001 mg/ml N.D. -4.4 N.D. N.D. -0.3
solid stress Fraxetin 3 mM; solid stress N.D. -4.4 N.D. N.D. +0.2
solid stress Fraxetin 2 mM; solid stress N.D. -3.0 N.D. N.D. -0.4
stress Nalidixic 0.015 mg/ml N.D. -2.8 N.D. N.D. -0.3
stress Nalidixic 0.025 mg/ml N.D. -2.5 N.D. N.D. -0.4
phage P. simiae Grant Run MOI 10 N.D. -2.4 N.D. N.D. -0.4
stress Lomefloxacin 0.0001 mM N.D. -2.4 N.D. N.D. -0.4
carbon source L-Valine (C) N.D. -1.8 N.D. N.D. -0.8
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -2.3 N.D. N.D. -0.2
solid stress Fraxetin 3 mM; solid stress N.D. -2.1 N.D. N.D. -0.4
solid stress Fraxetin 2 mM; solid stress N.D. -2.3 N.D. N.D. -0.1
stress Polymyxin B sulfate 0.006 mg/ml N.D. -2.7 N.D. N.D. +0.3
stress Neomycin 0.04 mg/ml N.D. -2.1 N.D. N.D. +0.4
stress Gentamicin 0.008 mg/ml N.D. -2.2 N.D. N.D. +0.9
soil soil sample 3; outgrowth in LB N.D. -0.6 N.D. N.D. +1.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +2.3 N.D. N.D. -0.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +2.3 N.D. N.D. -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +2.1 N.D. N.D. +0.3
soil soil sample 7; outgrowth in LB N.D. +0.4 N.D. N.D. +2.1
soil soil sample 6; outgrowth in LB N.D. +1.0 N.D. N.D. +1.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +2.4 N.D. N.D. +0.4
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.7 N.D. N.D. +2.3
soil soil sample 4; outgrowth in LB N.D. +1.4 N.D. N.D. +1.8
soil soil sample 8; outgrowth in LB N.D. +1.5 N.D. N.D. +1.8
soil soil sample 2; outgrowth in LB N.D. +2.5 N.D. N.D. +2.1
root root sample 6; outgrowth in LB N.D. +2.6 N.D. N.D. +2.4
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +4.1 N.D. N.D. +2.4
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. +4.8 N.D. N.D. +1.9
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PS417_12590
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