Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01250	PS417_01255	PS417_01260	PS417_01265	PS417_01270
solid stress	Fraxetin 2 mM; solid stress	+0.0	+0.0	-0.2	-0.4	-4.7
carbon source	octanoate (C)	-0.0	-0.1	-0.1	-1.8	-1.0
carbon source	octanoate (C)	+0.2	-0.0	-0.1	-2.0	-0.9
solid stress	Fraxetin 3 mM; solid stress	-0.0	-0.1	-0.1	-1.0	-1.6
carbon source	L-Histidine (C)	-0.2	-0.0	-0.0	-0.8	-1.6
solid stress	Fraxetin 3 mM; solid stress	-0.3	+0.1	-0.1	-1.1	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	-0.6	-0.1	-0.4	-1.3
phage	P. simiae ORA MOI 0.1	-0.2	+0.0	-0.6	-0.5	-1.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	+0.2	-0.4	-0.6	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.1	-0.9	+0.1	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	-0.3	-0.2	-0.2	-1.2
stress	Gentamicin 0.008 mg/ml	+0.1	-0.2	+0.4	-0.4	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.3	-0.2	-0.5	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	+0.3	+0.1	-0.5	-1.0
carbon source	Carbon source L-Ornithine 5 mM	+0.1	+0.1	+0.2	-0.9	-1.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.5	-0.2	-0.1	-1.3
carbon source	Carbon source L-Ornithine 5 mM	+0.3	-0.0	-0.1	-0.9	-0.6
carbon source	Carbon source L-Ornithine 10 mM	+0.3	+0.1	+0.0	-1.0	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.1	+0.5	+0.1	-2.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.3	-0.4	-0.1	-1.2
phage	JP1 MOI 10	-0.0	+0.2	+0.3	-0.3	-1.1
stress	methylglyoxal 0.032 vol%	-0.5	+0.1	-0.2	+0.7	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.2	-0.3	-0.5	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	-0.3	-0.2	+1.6
phage	P. simiae OR Antrim MOI 0.1	+0.4	+0.1	-0.4	-0.0	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.3	-0.6	+0.1	+1.2
carbon source	L-Valine (C)	+0.1	-0.4	+0.2	+0.2	+1.6
seeds	Growth on radish seeds for 72 hours	+0.4	+0.3	+0.5	-0.2	+1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.2	+0.1	-0.5	+2.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.0	-0.3	-0.6	+8.0