Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12520	PS417_12525	PS417_12530	PS417_12535	PS417_12540
soil	soil sample 5; outgrowth in LB	-1.0	-0.5	+1.1	-4.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.4	+0.2	-0.2	-0.0	-1.9
phage	JP1 MOI 10	-1.4	+0.2	-0.1	-0.3	-2.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	+0.1	-0.5	-0.8	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.8	-0.9	-1.7	-0.0
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	-2.3	+0.1	+0.1	-0.5
phage	JP1 MOI 1	-1.1	+0.4	-0.6	-0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.7	-0.3	-1.5	+1.0
stress	methylglyoxal 0.032 vol%	+0.5	-0.3	-0.2	-0.8	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.7	-1.0	-0.4	-0.3	+1.3
nophagecontrol	Only library	-0.0	+0.5	-0.2	-1.5	-0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	-0.9	-0.1	-0.3	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	+0.5	+0.4	-0.7	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	+0.1	-0.5	+0.7	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	-1.1	+0.7	+0.0	-0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	-0.1	+0.5	-1.1	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.1	-0.8	-0.2	+0.4	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.4	-0.2	-1.2	+0.8
soil	soil sample 7; outgrowth in LB	-1.3	-0.2	+0.8	+0.6	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.6	-0.7	-0.4	-1.1	+0.2
motility	inner cut, LB soft agar motility assay	-1.1	-0.5	+0.1	+0.7	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	-0.2	-0.2	+0.2	-1.1
phage	Wcs_1	+0.1	-0.7	-0.4	+0.5	+1.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.3	-0.6	+1.8	+0.3	-0.3
root	root sample 6; outgrowth in LB	-1.0	-0.5	+1.7	+0.5	+0.4
soil	soil sample 4; outgrowth in LB	-0.6	+0.7	+1.0	+0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+1.8	+0.6	-0.4	+0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3	-0.0	+1.5	+0.3	+0.9
soil	soil sample 8; outgrowth in LB	-0.3	+0.4	+1.0	+1.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+3.1	+0.1	+0.2	+0.2	-0.1