Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_12490	PS417_12495	PS417_12500	PS417_12505	PS417_12510
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-2.2	-0.7	-0.2	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.3	-0.3	-0.4	-0.1
phage	P. simiae OR Antrim MOI 1	-1.3	+0.0	+0.2	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.8	+0.0	-0.0	-0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.8	-0.1	-0.2	-0.9	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	-0.2	-0.3	-0.0	+0.2
carbon source	2-Deoxy-D-Ribose (C)	-1.2	-0.7	-0.3	+0.6	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.6	-0.3	-0.9	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.1	-0.1	+0.5	-0.0
phage	FRSphage	-1.5	+0.0	+0.0	+0.3	+0.0
soil	soil sample 5; outgrowth in LB	-0.5	+0.4	+0.1	-0.8	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.4	-0.6	+0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	+0.4	+0.1	-0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	+0.9	-0.2	-0.7	+0.3
carbon source	Carbon source D-Mannitol 10 mM	+0.7	+0.3	-0.3	-0.6	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.4	-0.5	-0.2	-0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.8	+0.3	-0.4	-0.4	-0.0
soil	soil sample 4; outgrowth in LB	+0.7	-0.7	-0.3	+0.4	+0.3
phage	JP1 MOI 10	+0.9	-0.5	-0.4	+0.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.1	+0.3	+0.6	+0.2
carbon source	L-Citrulline (C)	+1.1	-0.1	+0.1	-0.5	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	+0.5	-0.6	+0.1	+0.5	+0.1
seeds	Growth on radish seeds for 72 hours	-0.6	-0.2	-0.0	+1.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2	+0.1	+0.2	-0.6	-0.0
stress	Thallium(I) acetate 0.0625 mg/ml	+1.3	-0.4	-0.2	+0.1	-0.0
carbon source	L-Valine (C)	+1.4	-0.4	-0.1	+0.4	-0.2
carbon source	L-Valine (C)	+1.2	+0.0	-0.0	+0.3	-0.3
nophagecontrol	TIme6-nophage	+1.5	-0.1	+0.0	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.8	+0.2	+0.3	+0.5	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.6	+0.4	+0.1	+0.4	+0.1