Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12445	PS417_12450	PS417_12455	PS417_12460	PS417_12465
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.1	-1.6	-0.2	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.1	-1.7	-0.5	+0.2
nophagecontrol	TIme6-nophage	-0.2	-0.2	-1.1	-0.5	-0.0
phage	P. simiae OR1 MOI 0.1	-0.4	+0.1	-0.1	-1.1	-0.2
phage	JP1 MOI 10	+0.1	+0.2	-1.2	-0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	-0.6	-0.5	+0.6	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.3	-1.2	+0.4	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.4	+0.2	-1.2	+0.1	+0.1
seeds	Growth on radish seeds for 72 hours	+0.4	+0.1	-0.9	-0.4	-0.4
solid stress	Fraxetin 3 mM; solid stress	-1.1	+0.3	+0.6	-1.0	+0.2
stress	Gentamicin 0.008 mg/ml	+0.6	-0.1	-0.7	-0.9	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.0	+0.5	-1.7	+0.2	+0.2
root	root sample 6; outgrowth in LB	+0.1	-0.4	+0.3	-1.0	+0.2
stress	methylglyoxal 0.032 vol%	+0.0	-0.3	+0.7	-0.6	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.2	-1.5	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.2	-0.9	+0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-0.3	+0.3	+0.5	+0.2
phage	Wcs_0.1	-0.8	-0.5	+0.4	+0.7	+0.1
soil	soil sample 6; outgrowth in LB	+0.4	-0.4	+0.6	-0.1	-0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.1	-0.4	-0.4	-0.2	+0.1
carbon source	D-Trehalose (C)	+0.9	+0.2	-0.3	-0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	+0.1	+1.0	-0.2	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	-0.4	+0.6	-0.4	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.3	-1.0	+0.5	+0.7
phage	JP1 MOI 1	+0.8	-0.2	-0.1	+0.8	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.9	-0.5	+0.0	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.6	+0.2	+0.7	+0.6	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.9	-0.4	+0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.0	+1.9	+0.0	+0.2
nitrogen source	Adenine (N)	+0.1	+0.4	+0.6	+1.2	+0.3