Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12420	PS417_12425	PS417_12430	PS417_12435	PS417_12445
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.0	-1.7	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.0	-1.5	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.1	-1.0	-0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	-0.0	-1.0	-0.4
phage	Wcs_1	N.D.	N.D.	-0.2	-0.4	-0.7
solid stress	Fraxetin 3 mM; solid stress	N.D.	N.D.	+0.1	-0.1	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	-0.1	-1.0	-0.1
phage	Wcs_0.1	N.D.	N.D.	-0.2	-0.1	-0.8
seeds	Growth on radish seeds for 72 hours	N.D.	N.D.	-0.2	-0.0	-0.9
solid stress	Fraxetin 3 mM; solid stress	N.D.	N.D.	-0.0	+0.1	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.1	-0.2	-0.9
motility	inner cut, LB soft agar motility assay	N.D.	N.D.	-0.3	+0.0	-0.6
solid stress	Fraxetin 3 mM; solid stress	N.D.	N.D.	-0.1	+0.1	-0.7
soil	soil sample 7; outgrowth in LB	N.D.	N.D.	-0.2	-0.5	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.3	-1.5	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.0	+0.3	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	N.D.	+0.4	-0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.4	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.0	-0.6	+0.4
soil	soil sample 6; outgrowth in LB	N.D.	N.D.	-0.1	-0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	N.D.	+0.0	-0.7	+0.5
soil	soil sample 3; outgrowth in LB	N.D.	N.D.	-0.0	-0.2	+0.9
phage	JP1 MOI 1	N.D.	N.D.	-0.1	-0.0	+0.8
phage	JP1 MOI 0.1	N.D.	N.D.	+0.0	-0.1	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	N.D.	+0.2	+0.2	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	N.D.	+0.1	+0.3	+0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	N.D.	+0.1	-0.2	+1.1
carbon source	D-Trehalose (C)	N.D.	N.D.	+0.1	-0.1	+0.9
phage	JP1 MOI 10	N.D.	N.D.	+0.1	+0.0	+1.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	N.D.	+0.2	+0.3	+0.9