Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12410	PS417_12415	PS417_12420	PS417_12425	PS417_12430
no phage control	Time6-nophage	N.D.	-0.4	N.D.	N.D.	-0.2
solid stress	Fraxetin 1 mM; solid stress	N.D.	-0.2	N.D.	N.D.	-0.3
solid stress	Fraxetin 1 mM; solid stress	N.D.	-0.1	N.D.	N.D.	-0.3
phage	P. simiae OR Antrim MOI 0.1	N.D.	-0.3	N.D.	N.D.	-0.1
motility	outer cut, LB soft agar motility assay	N.D.	-0.3	N.D.	N.D.	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.5	N.D.	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	N.D.	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.6	N.D.	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.4	N.D.	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.3	N.D.	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.3	N.D.	N.D.	+0.3
seeds	Growth on radish seeds for 72 hours	N.D.	+0.2	N.D.	N.D.	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	N.D.	N.D.	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.3	N.D.	N.D.	+0.4
phage	JP1 MOI 1	N.D.	+0.4	N.D.	N.D.	-0.2
seeds	Growth on radish seeds for 72 hours	N.D.	+0.3	N.D.	N.D.	-0.2
phage	JP1 MOI 10	N.D.	+0.3	N.D.	N.D.	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.2	N.D.	N.D.	+0.4
seeds	Growth on radish seeds for 72 hours	N.D.	+0.4	N.D.	N.D.	-0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	+0.5	N.D.	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	N.D.	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	N.D.	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	N.D.	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.4	N.D.	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	N.D.	N.D.	+0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	+0.2	N.D.	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.6	N.D.	N.D.	+0.0
stress	methylglyoxal 0.032 vol%	N.D.	+0.3	N.D.	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.5	N.D.	N.D.	+0.1
phage	JP1 MOI 10	N.D.	+0.8	N.D.	N.D.	+0.1