Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12405 and PS417_12410 are separated by 52 nucleotidesPS417_12410 and PS417_12415 are separated by 15 nucleotidesPS417_12415 and PS417_12420 are separated by 171 nucleotidesPS417_12420 and PS417_12425 are separated by 101 nucleotides PS417_12405: PS417_12405 - DNA-binding protein, at 2,698,755 to 2,699,471 _12405 PS417_12410: PS417_12410 - ketosteroid isomerase, at 2,699,524 to 2,699,859 _12410 PS417_12415: PS417_12415 - ATPase, at 2,699,875 to 2,700,978 _12415 PS417_12420: PS417_12420 - GNAT family acetyltransferase, at 2,701,150 to 2,701,641 _12420 PS417_12425: PS417_12425 - hypothetical protein, at 2,701,743 to 2,701,964 _12425
Group Condition PS417_12405 PS417_12410 PS417_12415 PS417_12420 PS417_12425
carbon source L-Valine (C) -1.1 N.D. +0.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.9 N.D. -0.0 N.D. N.D.
soil soil sample 3; outgrowth in LB -0.7 N.D. -0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 N.D. -0.6 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 N.D. +0.1 N.D. N.D.
soil soil sample 5; outgrowth in LB -0.7 N.D. -0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 N.D. -0.3 N.D. N.D.
soil soil sample 6; outgrowth in LB -0.7 N.D. +0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.6 N.D. +0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. +0.2 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 N.D. -0.5 N.D. N.D.
r2a control R2A control -0.5 N.D. +0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.5 N.D. N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.6 N.D. +0.5 N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.5 N.D. +0.4 N.D. N.D.
no phage control Time6-nophage +0.3 N.D. -0.4 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 N.D. -0.4 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 N.D. -0.4 N.D. N.D.
liquid stress 80% Methanol 3 mM; liquid stress +0.4 N.D. -0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 N.D. +0.5 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 N.D. -0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 N.D. -0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 N.D. +0.0 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.8 N.D. -0.1 N.D. N.D.
phage JP1 MOI 10 -0.1 N.D. +0.8 N.D. N.D.
stress methylglyoxal 0.032 vol% +0.5 N.D. +0.3 N.D. N.D.
phage JP1 MOI 10 +0.5 N.D. +0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 N.D. +0.4 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.8 N.D. +0.1 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 N.D. -0.2 N.D. N.D.
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