Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01220	PS417_01230	PS417_01235	PS417_01245	PS417_01250
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.5	-0.2	-0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-0.1	-0.2	-0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.7	-0.1	-0.0	-0.5
stress	Gentamicin 0.008 mg/ml	+0.2	-0.9	-0.4	+0.1	+0.1
stress	methylglyoxal 0.032 vol%	+0.3	-0.4	-0.2	+0.1	-0.5
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	-0.4	-0.4	-0.3	+0.3
stress	Chloramphenicol 0.015 mg/ml	+0.2	-0.5	-0.3	-0.1	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	+0.4	-0.7	+0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.5	-0.0	-0.4	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.3	-0.2	-0.3	+0.3	+0.2
phage	P. simiae OR Antrim MOI 10	-0.5	-0.1	+0.5	+0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.4	+0.5	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.1	-0.2	-0.1	-0.2
stress	R2A with Fusaric 120 ug/mL	+0.1	+0.5	-0.5	+0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.2	+0.1	+0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.4	-0.2	-0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.4	+0.3	-0.3	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.4	+0.5	+0.7	-0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.7	-0.2	-0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+1.0	-0.2	-0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.2	-0.2	-0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.5	-0.1	-0.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.4	+0.2	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.6	+0.4	+0.1	+0.1	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	+0.4	+0.4	+0.2	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.7	+0.4	+0.0	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.2	+0.7	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.5	+0.2	+0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.9	+0.2	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.5	+0.5	+0.3	+0.0