Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_12375	PS417_12380	PS417_12385	PS417_12390	PS417_12395
carbon source	octanoate (C)	-2.5	-0.7	N.D.	-0.5	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	-0.1	N.D.	-0.9	-0.5
carbon source	octanoate (C)	-2.1	-0.2	N.D.	-0.3	-0.3
nophagecontrol	Only library	-0.3	-0.8	N.D.	-1.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	-0.1	N.D.	-0.6	-0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-1.4	-0.2	N.D.	-0.6	-0.2
phage moi 100	Time6-phageFRS	-0.7	-0.3	N.D.	-1.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.7	-0.5	N.D.	-0.6	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	-0.1	N.D.	-1.5	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.4	-0.6	N.D.	+0.7	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.9	N.D.	+0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-2.3	-0.4	N.D.	+0.8	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.6	N.D.	-0.7	+0.5
phage	P. simiae Grant Run MOI 0.1	-0.5	-1.3	N.D.	+0.2	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.1	N.D.	-1.4	+0.4
phage	JP1 MOI 10	+0.2	+0.6	N.D.	-2.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.1	N.D.	+0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.1	-0.0	N.D.	+0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	-0.6	N.D.	+1.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	-0.4	N.D.	+1.5	+0.0
stress	Gentamicin 0.008 mg/ml	+1.0	-1.6	N.D.	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.2	N.D.	+1.3	-0.1
seeds	Growth on radish seeds for 72 hours	+1.4	-0.6	N.D.	-0.6	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-1.0	N.D.	+1.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.6	N.D.	+1.5	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	-1.1	N.D.	+0.8	+0.1
soil	soil sample 7; outgrowth in LB	-0.9	-0.2	N.D.	+1.5	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	-1.3	N.D.	+0.3	+2.1
solid stress	Fraxetin 3 mM; solid stress	+1.4	-0.2	N.D.	+1.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	-0.1	N.D.	+2.0	+0.4