Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF2427 and GFF2428 are separated by 14 nucleotidesGFF2428 and GFF2429 are separated by 7 nucleotidesGFF2429 and GFF2430 are separated by 22 nucleotidesGFF2430 and GFF2431 are separated by 158 nucleotides GFF2427 - Transcriptional regulator, MarR family, at 478,211 to 478,834 GFF2427 GFF2428 - Transcriptional regulator, LysR family, at 478,849 to 479,763 GFF2428 GFF2429 - putative membrane protein, at 479,771 to 480,595 GFF2429 GFF2430 - Protein secretion chaperonin CsaA, at 480,618 to 480,977 GFF2430 GFF2431 - RNA polymerase ECF-type sigma factor, at 481,136 to 481,663 GFF2431
Group Condition GFF2427 GFF2428 GFF2429 GFF2430 GFF2431
complex community Community=Locust bean gum; Passage=4 -0.8 N.D. -1.7 +0.1 -0.3
complex community Community=arabino-guar; Passage=4 -0.2 N.D. +0.1 -0.3 -1.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 N.D. -0.8 -0.8 +0.0
complex community Community=arabino-guar; Passage=4 -0.9 N.D. -0.8 +0.2 +0.0
complex community Community=Locust bean gum; Passage=4 -0.9 N.D. +0.2 -1.5 +0.8
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 N.D. -0.1 -0.1 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 N.D. -0.5 -0.3 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.0 N.D. +0.7 -0.7 -1.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.7 N.D. +0.6 -0.4 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 N.D. -1.0 -0.0 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 N.D. -1.1 -0.4 +0.4
no phage control no phage control +0.3 N.D. -0.7 -0.5 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.0 N.D. -0.8 -0.3 +0.5
complex community Community=arabino-guar; Passage=4 -0.6 N.D. -0.2 -0.3 +0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 N.D. -0.5 -0.4 +0.6
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.4 N.D. -0.3 -0.2 +0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 N.D. -0.6 -0.2 +0.3
complex community Community=guar; Passage=4 -1.5 N.D. +1.6 -0.3 -0.1
complex community Community=guar; Passage=4 -0.3 N.D. +1.0 -0.5 -0.4
phage phage_bap4 -0.2 N.D. +0.5 +0.2 -0.5
complex community Community=Locust bean gum; Passage=4 +0.5 N.D. -0.2 +0.1 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.5 N.D. +0.4 -0.2 +0.4
complex community Community=guar; Passage=4 -0.4 N.D. +1.2 -0.2 -0.1
complex community Community=Kojac gum; Passage=4 +0.3 N.D. -0.4 -0.5 +1.1
vitamin M9 with Supernatant from Cyptococcus -0.5 N.D. +0.6 +0.1 +0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.5 N.D. +0.2 -0.1 +0.5
complex community Community=Locust bean gum; Passage=4 +0.4 N.D. -0.1 +0.2 +0.6
complex community Community=arabino-guar; Passage=4 -0.5 N.D. +0.8 +0.6 +0.5
vitamin M9 with Supernatant from Cyptococcus -0.0 N.D. +0.4 +0.5 +1.0
complex community Community=guar; Passage=4 +0.7 N.D. +1.0 +0.4 +1.1
remove
GFF2427
plot		 remove
GFF2428
plot		 remove
GFF2429		 remove
GFF2430
plot		 remove
GFF2431
plot