Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12355 and PS417_12360 are separated by 53 nucleotidesPS417_12360 and PS417_12365 are separated by 114 nucleotidesPS417_12365 and PS417_12370 are separated by 144 nucleotidesPS417_12370 and PS417_12375 overlap by 1 nucleotides PS417_12355: PS417_12355 - magnesium chelatase, at 2,688,136 to 2,689,134 _12355 PS417_12360: PS417_12360 - magnesium chelatase, at 2,689,188 to 2,689,790 _12360 PS417_12365: PS417_12365 - cobalt chelatase, at 2,689,905 to 2,690,852 _12365 PS417_12370: PS417_12370 - inorganic polyphosphate kinase, at 2,690,997 to 2,691,887 _12370 PS417_12375: PS417_12375 - serine/threonine protein phosphatase, at 2,691,887 to 2,692,858 _12375
Group Condition PS417_12355 PS417_12360 PS417_12365 PS417_12370 PS417_12375
soil soil sample 7; outgrowth in LB -4.0 N.D. -0.5 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.9 N.D. -0.2 N.D. -1.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.0 N.D. -0.8 N.D. -0.9
phage P. simiae OR Antrim MOI 0.1 -4.6 N.D. +0.3 N.D. -0.0
nophagecontrol Only library -3.2 N.D. -0.6 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.1 N.D. -0.4 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 N.D. -0.4 N.D. -1.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -2.7 N.D. -0.3 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.8 N.D. -0.0 N.D. -1.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.5 N.D. +0.5 N.D. -1.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8 N.D. -0.1 N.D. -2.3
carbon source octanoate (C) -0.6 N.D. +0.1 N.D. -2.5
phage P. simiae OR1 MOI 0.1 -1.9 N.D. -0.6 N.D. -0.6
root root sample 6; outgrowth in LB -3.1 N.D. +0.1 N.D. -0.1
soil soil sample 5; outgrowth in LB -2.2 N.D. -0.5 N.D. -0.3
carbon source octanoate (C) -0.6 N.D. -0.0 N.D. -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 N.D. -0.3 N.D. -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 N.D. +0.0 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.0 N.D. +0.3 N.D. -0.4
phage JP1 MOI 10 -2.2 N.D. -0.3 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 N.D. -0.8 N.D. -1.6
phage JP1 MOI 1 -1.1 N.D. +0.7 N.D. -1.2
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -1.9 N.D. -0.4 N.D. +0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.7 N.D. -0.4 N.D. +0.8
nitrogen source Adenosine (N) -1.8 N.D. -0.1 N.D. +0.7
seeds Growth on radish seeds for 72 hours -1.4 N.D. -0.4 N.D. +1.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 N.D. +1.5 N.D. -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +3.0 N.D. -0.5 N.D. -0.8
stress Gentamicin 0.008 mg/ml +1.4 N.D. -0.5 N.D. +1.0
nitrogen source Glycine (N) +2.9 N.D. +0.1 N.D. -0.2
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