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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2416 and GFF2417 overlap by 1 nucleotides
GFF2417 and GFF2418 overlap by 8 nucleotides
GFF2418 and GFF2419 overlap by 4 nucleotides
GFF2419 and GFF2420 are separated by 155 nucleotides
GFF2416 - Putative polyferredoxin, at 29,106 to 29,969
GFF2416
GFF2417 - Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3), at 29,969 to 30,778
GFF2417
GFF2418 - Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3), at 30,771 to 31,400
GFF2418
GFF2419 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 31,397 to 33,775
GFF2419
GFF2420 - Penicillin-insensitive transglycosylase (EC 2.4.2.-) & transpeptidase PBP-1C, at 33,931 to 36,246
GFF2420
Group
Condition
GFF2416
GFF2417
GFF2418
GFF2419
GFF2420
phage
LB_plus_SM_buffer with Ffm_phage 15 MOI
-0.1
+0.2
-0.9
-0.2
+0.1
phage
LB_plus_SM_buffer with 6F2_phage 15 MOI
+0.4
+0.1
-1.1
+0.0
-0.2
phage
LB_plus_SM_buffer with P22_phage 15 MOI
+1.0
-0.1
-0.9
-0.1
-0.3
phage
LB_plus_SM_buffer with S16_phage 15 MOI
+0.5
+0.4
-0.9
-0.2
-0.1
phage
6F2_phage 15 MOI
+0.3
+0.3
-0.5
-0.2
-0.2
phage
phi19h1_phage 15 MOI
+0.4
+0.2
-0.8
-0.0
+0.0
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
+0.3
+0.1
-0.6
-0.0
+0.1
micoeukaryotes
Dictyostellum sp.mixed culture-1
+0.3
+0.2
-0.5
+0.3
+0.2
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.1
+0.4
+0.4
-0.1
-0.2
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
+0.2
-0.0
+0.5
-0.1
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+0.3
+0.2
-0.4
+0.2
+0.3
phage
LB_plus_SM_buffer with 6C2_phage 15 MOI
+0.2
+0.3
-0.2
+0.2
+0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+0.4
+0.3
-0.8
+0.1
+0.6
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
-0.2
-0.0
+0.5
+0.4
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+0.4
+0.2
-0.5
+0.1
+0.4
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
+0.4
+0.1
-0.5
+0.2
+0.5
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
+0.3
+0.4
-0.1
-0.0
+0.2
phage
LB_plus_SM_buffer with Br60_phage 0.0000005 MOI
+0.3
-0.2
+0.5
+0.1
+0.2
phage
Br60_phage 15 MOI
+0.6
+0.3
-0.1
-0.0
+0.1
phage
LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
+0.5
-0.0
+0.2
+0.1
+0.2
phage
LB_plus_SM_buffer with 6C2_phage 0.25 MOI
+0.4
+0.1
+0.1
+0.2
+0.2
phage
6H2_phage 10 MOI; agar plate assay
+0.1
+0.2
+0.4
+0.0
+0.3
phage
phi19h1_phage 15 MOI
+0.6
+0.0
+0.5
-0.1
+0.1
nophagecontrol
No phage control
+0.7
+0.1
+0.2
-0.0
+0.2
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
+0.9
-0.1
+0.2
-0.0
+0.5
phage
LB_plus_SM_buffer with 6F2_phage 1.875 MOI
+0.8
+0.1
+0.3
+0.0
+0.4
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+0.5
+0.3
-0.1
+0.3
+0.6
phage
Ffm_phage 10 MOI; agar plate assay
+1.0
-0.0
-0.1
+0.3
+0.4
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
+1.4
+0.7
-0.4
+0.4
+0.5
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
+0.3
-0.4
+4.0
-0.3
+0.3
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