Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12255 and PS417_12260 are separated by 60 nucleotidesPS417_12260 and PS417_12265 are separated by 227 nucleotidesPS417_12265 and PS417_12270 are separated by 105 nucleotidesPS417_12270 and PS417_12275 are separated by 92 nucleotides PS417_12255: PS417_12255 - hypothetical protein, at 2,663,777 to 2,664,121 _12255 PS417_12260: PS417_12260 - hypothetical protein, at 2,664,182 to 2,664,418 _12260 PS417_12265: PS417_12265 - ACP phosphodiesterase, at 2,664,646 to 2,665,203 _12265 PS417_12270: PS417_12270 - pyruvate dehydrogenase, at 2,665,309 to 2,667,018 _12270 PS417_12275: PS417_12275 - 2,4-dienoyl-CoA reductase, at 2,667,111 to 2,668,343 _12275
Group Condition PS417_12255 PS417_12260 PS417_12265 PS417_12270 PS417_12275
phage P. simiae ORA MOI 0.1 -0.5 -0.8 -0.4 -0.7 -0.1
phage P. simiae ORA MOI 10 -0.5 -0.7 -0.4 -0.5 -0.1
phage JP1 MOI 10 -0.5 -1.3 +0.1 -0.2 -0.0
root root sample 6; outgrowth in LB -0.1 -0.8 -0.2 -0.5 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.8 +0.4 -0.5 -0.3
carbon source L-Valine (C) -0.6 -0.6 +0.2 -0.8 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -0.9 +0.2 -0.5 -0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 -1.0 -0.5 -0.5 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.7 +0.5 -0.9 -0.3
carbon source L-Leucine (C) -1.1 -0.5 -0.2 +0.5 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.0 -0.7 -0.4 -0.6 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 -0.2 +0.6 -0.5 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.6 +0.1 -0.4 -0.8 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -0.6 -0.4 +0.4 +0.1
phage P. simiae OR Antrim MOI 10 +0.7 -0.9 -0.2 -0.3 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 +0.4 +0.4 -0.7 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.1 +0.7 -0.6 -0.5 -0.4
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.2 +0.5 -0.8 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.3 +0.5 -0.9 -0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.6 +0.2 +0.0 -0.6 -0.7
phage JP1 MOI 0.1 +0.3 -1.3 +0.1 +0.4 +0.0
phage JP1 MOI 10 +0.2 -0.9 +0.3 +0.8 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 +1.0 +0.2 -0.5 +0.4
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.4 +0.9 -0.5 +0.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +1.5 -0.5 +0.3 +0.2
seeds Growth on radish seeds for 72 hours -0.4 +0.3 +0.8 +0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +0.5 +0.3 +0.2 +0.7
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.8 +0.9 -0.2 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.2 +1.4 -0.1 +1.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 +1.8 -0.1 +0.4 +0.6
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PS417_12255
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PS417_12260
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PS417_12270
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PS417_12275
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