Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00115	PS417_00120	PS417_00125	PS417_00130	PS417_00135
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	N.D.	N.D.	-0.3	+0.0
phage	JP1 MOI 1	-0.3	N.D.	N.D.	-0.8	-0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	-0.8	-0.0
motility	inner cut, LB soft agar motility assay	-0.1	N.D.	N.D.	-0.4	-0.5
phage	Wcs_1	-0.8	N.D.	N.D.	-0.3	+0.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	+0.4	-0.5
soil	soil sample 4; outgrowth in LB	+0.4	N.D.	N.D.	-0.6	-0.3
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-0.4	N.D.	N.D.	+0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	+0.5	-0.3
phage	JP1 MOI 10	+0.4	N.D.	N.D.	-0.2	-0.5
soil	soil sample 7; outgrowth in LB	+0.4	N.D.	N.D.	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	N.D.	N.D.	+0.6	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	N.D.	N.D.	+0.6	-0.1
stress	1-ethyl-3-methylimidazolium acetate 35 mM	-0.4	N.D.	N.D.	+0.6	-0.3
soil	soil sample 5; outgrowth in LB	-0.6	N.D.	N.D.	+0.3	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	N.D.	N.D.	+0.6	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	+0.8	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	N.D.	N.D.	-0.3	+0.3
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.3	N.D.	N.D.	+0.6	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	N.D.	N.D.	+0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	N.D.	N.D.	-0.5	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	N.D.	N.D.	+0.9	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9	N.D.	N.D.	-0.0	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	N.D.	N.D.	+0.6	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	N.D.	N.D.	+0.7	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	N.D.	N.D.	+0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	N.D.	+0.9	+0.4
stress	methylglyoxal 0.032 vol%	+0.5	N.D.	N.D.	+0.9	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	N.D.	N.D.	+1.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	N.D.	N.D.	+1.6	+0.1