Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12205 and PS417_12210 overlap by 4 nucleotidesPS417_12210 and PS417_12215 are separated by 211 nucleotidesPS417_12215 and PS417_12220 are separated by 98 nucleotidesPS417_12220 and PS417_12225 are separated by 65 nucleotides PS417_12205: PS417_12205 - hypothetical protein, at 2,651,530 to 2,653,362 _12205 PS417_12210: PS417_12210 - ABC transporter substrate-binding protein, at 2,653,359 to 2,655,188 _12210 PS417_12215: PS417_12215 - lytic transglycosylase, at 2,655,400 to 2,656,815 _12215 PS417_12220: PS417_12220 - hydroxyacylglutathione hydrolase, at 2,656,914 to 2,657,681 _12220 PS417_12225: PS417_12225 - SAM-dependent methyltransferase, at 2,657,747 to 2,658,505 _12225
Group Condition PS417_12205 PS417_12210 PS417_12215 PS417_12220 PS417_12225
stress methylglyoxal 0.032 vol% -0.2 -0.0 +0.1 -4.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.1 -0.6 -1.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.6 -0.3 -0.3 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.6 -0.7 -1.5 N.D.
stress Neomycin 0.04 mg/ml -0.3 -0.1 -1.5 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.3 -0.8 -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.3 +0.1 -2.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.1 -0.8 -0.8 N.D.
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -1.3 -0.2 -0.2 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.1 -0.6 -1.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.4 -0.2 -0.8 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -1.1 -0.6 -0.2 -0.3 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -1.2 -0.5 -0.4 +0.0 N.D.
root root sample 6; outgrowth in LB -1.5 +0.1 -0.4 -0.1 N.D.
soil soil sample 6; outgrowth in LB -1.6 +0.3 -0.3 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 +0.7 -0.5 -0.5 N.D.
soil soil sample 5; outgrowth in LB -1.9 +0.2 -0.5 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 +0.5 -0.3 -1.1 N.D.
soil soil sample 2; outgrowth in LB -1.6 +0.3 -0.2 -0.0 N.D.
carbon source L-Valine (C) +0.1 +0.4 -0.4 -1.5 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -1.1 +0.4 +0.0 -0.6 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 +0.6 -0.3 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.3 -0.1 +0.6 -0.2 N.D.
soil soil sample 7; outgrowth in LB -1.4 +0.2 -0.1 +0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +0.7 -0.5 -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.9 +0.2 +0.9 -0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +1.5 -0.0 +0.3 -0.4 N.D.
carbon source Trisodium citrate (C) +2.4 -0.1 +0.0 +0.2 N.D.
carbon source Trisodium citrate (C) +2.4 +0.1 +0.2 +0.3 N.D.
stress Doxycycline hyclate 0.001 mg/ml +0.2 +0.0 +1.6 +1.2 N.D.
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