Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12155	PS417_12160	PS417_12165	PS417_12170	PS417_12175
phage	P. simiae ORA MOI 0.1	-0.1	-1.1	-0.8	-0.5	-0.6
soil	soil sample 2; outgrowth in LB	-0.3	-0.8	-0.3	-0.4	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.8	-0.6	-0.2	-1.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.3	-0.9	-0.4	-0.7	-0.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	-0.7	-0.5	-0.2	-1.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.8	-1.7	-0.2	+0.1	+0.0
soil	soil sample 7; outgrowth in LB	-0.3	+0.2	-0.8	-0.7	-0.5
phage	P. simiae Grant Run MOI 0.1	-0.8	-0.5	-0.4	+0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.3	-0.1	+0.0	-2.2
soil	soil sample 4; outgrowth in LB	+0.2	-0.2	-0.4	-1.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	-0.4	-0.7	+0.1	+0.3
phage	P. simiae OR1 MOI 0.1	+0.3	-0.3	+0.3	-0.4	-1.0
phage	JP1 MOI 10	-0.8	+0.7	+0.1	-0.2	-1.0
stress	Gentamicin 0.008 mg/ml	+0.5	-0.1	+0.1	-0.0	-1.6
stress	methylglyoxal 0.032 vol%	-0.6	-1.1	+0.1	+0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.6	-0.3	-0.4	+1.0
seeds	Growth on radish seeds for 72 hours	+0.5	+0.9	-0.3	-0.6	-0.8
seeds	Growth on radish seeds for 72 hours	+0.6	+0.2	+0.7	-0.2	-1.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	-1.1	+0.7	+0.7	+0.9
seeds	Growth on radish seeds for 24 hours	+0.4	+1.1	-0.2	-0.2	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.2	-0.5	+0.8	-0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.4	+0.7	-0.6	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.9	+0.6	+0.5	+0.7
carbon source	Trisodium citrate (C)	-0.6	+0.2	+0.9	+0.6	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	-0.2	+1.4	+0.9	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	-1.1	+0.7	+0.8	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+1.5	+0.1	-0.1	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	+0.2	+0.4	+0.7	+0.9
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.6	-0.0	-0.0	+1.6
liquid stress	Fraxetin 2 mM; liquid stress	+0.3	+0.2	+0.5	+0.6	+0.9