Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12125	PS417_12130	PS417_12135	PS417_12140	PS417_12145
carbon source	D-Glucosamine Hydrochloride (C)	-3.2	-0.2	-0.1	-0.2	-0.4
carbon source	D-Glucosamine Hydrochloride (C)	-3.4	-0.3	+0.2	-0.1	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	-0.7	-0.4	-0.1	-0.4
soil	soil sample 3; outgrowth in LB	-0.4	-0.4	-0.1	-0.3	-0.8
liquid stress	Scopoletin 3 mM; liquid stress	-0.2	-0.1	-0.2	-0.6	-0.6
no phage control	Time6-nophage	-0.2	-0.6	-0.8	-0.0	-0.0
soil	soil sample 7; outgrowth in LB	-0.1	+0.1	-0.8	-0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.7	-0.5	+0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	-1.1	+0.3	-0.1
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.3	+0.2	-0.4	-0.5	-0.4
phage	P. simiae OR Antrim MOI 0.1	-0.4	+0.4	-0.6	-0.2	-0.4
stress	methylglyoxal 0.032 vol%	+0.5	-0.5	-0.7	+0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.1	-0.3	-0.2	+0.4
carbon source	L-Valine (C)	+0.4	-0.4	-0.5	-0.4	+0.2
phage	Wcs_1	-0.3	+0.5	-0.7	-0.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.5	-1.1	+0.1	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	-0.5	-0.5	-0.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	+0.2	-0.6	+0.5	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	+0.2	-0.6	+0.2	+0.3
phage	JP1 MOI 0.1	+0.8	-0.2	-1.1	+0.5	-0.2
seeds	Growth on radish seeds for 72 hours	+0.1	+0.4	-0.8	-0.2	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+0.6	-0.5	-0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.8	-0.3	-0.6	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.4	-0.3	-0.1	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.1	-0.6	+0.2	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.3	+1.1	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.9	+0.0	-0.6	+0.1	+0.3
seeds	Growth on radish seeds for 72 hours	-0.6	+0.4	+0.8	+0.2	+0.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.4	-0.2	+0.5	+0.5	-0.1
stress	Gentamicin 0.008 mg/ml	+0.3	-0.4	+1.3	-0.4	+0.8