Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12120	PS417_12125	PS417_12130	PS417_12135	PS417_12140
carbon source	D-Glucosamine Hydrochloride (C)	-1.6	-3.4	-0.3	+0.2	-0.1
carbon source	D-Glucosamine Hydrochloride (C)	-1.2	-3.2	-0.2	-0.1	-0.2
soil	soil sample 3; outgrowth in LB	-2.6	-0.4	-0.4	-0.1	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-3.5	+0.1	-0.1	-0.3	+0.2
soil	soil sample 2; outgrowth in LB	-2.5	+0.2	+0.1	-0.4	-0.6
soil	soil sample 4; outgrowth in LB	-1.9	-0.1	+0.1	-0.8	-0.3
soil	soil sample 7; outgrowth in LB	-1.7	-0.1	+0.1	-0.8	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-2.4	-0.3	+0.0	+0.3	-0.5
soil	soil sample 6; outgrowth in LB	-1.7	-0.2	-0.2	-0.1	-0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-1.3	-0.7	-0.4	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.8	-0.2	+0.6	-0.5	-0.5
soil	soil sample 5; outgrowth in LB	-2.1	-0.4	+0.0	+0.5	-0.3
soil	soil sample 8; outgrowth in LB	-1.0	-0.3	-0.1	-0.6	-0.3
root	root sample 6; outgrowth in LB	-1.9	+0.4	+0.0	-0.7	+0.0
nitrogen source	Glycine (N)	-1.3	-0.4	-0.1	-0.2	+0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	-1.0	-0.1	+0.2	-0.6	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.1	-0.7	-0.5	+0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-1.5	+0.2	-0.5	+0.3	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.4	+0.4	+0.0	-0.2	-0.0
phage	Wcs_1	-0.4	-0.3	+0.5	-0.7	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	-0.3	+0.2	+0.1	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.3	-0.1	+0.2	+0.1	+0.4
carbon source	L-Valine (C)	+0.4	+0.4	-0.4	-0.5	-0.4
phage	JP1 MOI 0.1	-0.2	+0.8	-0.2	-1.1	+0.5
seeds	Growth on radish seeds for 72 hours	-0.9	-0.6	+0.4	+0.8	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	+0.8	-0.3	-0.6	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.7	+0.4	-0.2	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	+0.3	-0.3	-0.3	-0.1
stress	Gentamicin 0.008 mg/ml	-0.0	+0.3	-0.4	+1.3	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.6	-0.4	+0.0	+0.2	+0.7