Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12110	PS417_12115	PS417_12120	PS417_12125	PS417_12130
carbon source	D-Glucosamine Hydrochloride (C)	-1.3	N.D.	-1.6	-3.4	-0.3
carbon source	D-Glucosamine Hydrochloride (C)	-1.2	N.D.	-1.2	-3.2	-0.2
soil	soil sample 3; outgrowth in LB	-1.4	N.D.	-2.6	-0.4	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.3	N.D.	-1.8	-0.2	+0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.9	N.D.	-2.4	-0.3	+0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	N.D.	-0.2	-1.3	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	+0.2	N.D.	-3.5	+0.1	-0.1
soil	soil sample 5; outgrowth in LB	-0.5	N.D.	-2.1	-0.4	+0.0
soil	soil sample 2; outgrowth in LB	-0.6	N.D.	-2.5	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.9	N.D.	+0.1	-0.0	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	N.D.	-0.6	+0.1	-0.7
stress	Doxycycline hyclate 0.001 mg/ml	-1.6	N.D.	-0.3	-0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	N.D.	-0.0	-0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.1	N.D.	-0.4	-0.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	-1.3	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	N.D.	-0.4	+0.1	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.3	N.D.	+0.1	-0.1	+0.2
seeds	Growth on radish seeds for 72 hours	-1.0	N.D.	-0.9	-0.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	N.D.	-0.3	+0.1	-0.9
soil	soil sample 4; outgrowth in LB	+0.2	N.D.	-1.9	-0.1	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	N.D.	+0.4	-0.4	-0.3
soil	soil sample 6; outgrowth in LB	+0.6	N.D.	-1.7	-0.2	-0.2
root	root sample 6; outgrowth in LB	+0.2	N.D.	-1.9	+0.4	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	N.D.	+0.1	+0.7	-0.4
soil	soil sample 8; outgrowth in LB	+0.8	N.D.	-1.0	-0.3	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	N.D.	-1.4	+0.4	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+2.2	N.D.	-1.1	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.7	N.D.	+0.1	-0.2	-0.3
carbon source	L-Valine (C)	+1.1	N.D.	+0.4	+0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	N.D.	+1.1	+0.3	-0.3