Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12065 and PS417_12070 are separated by 283 nucleotidesPS417_12070 and PS417_12075 are separated by 63 nucleotidesPS417_12075 and PS417_12080 are separated by 263 nucleotidesPS417_12080 and PS417_12085 overlap by 11 nucleotides PS417_12065: PS417_12065 - xylitol ABC transporter, ATPase component (from data), at 2,620,222 to 2,621,709 _12065 PS417_12070: PS417_12070 - ribose 5-phosphate isomerase, at 2,621,993 to 2,622,454 _12070 PS417_12075: PS417_12075 - DNA-binding protein, at 2,622,518 to 2,623,498 _12075 PS417_12080: PS417_12080 - membrane protein, at 2,623,762 to 2,625,324 _12080 PS417_12085: PS417_12085 - thioredoxin, at 2,625,314 to 2,625,649 _12085
Group Condition PS417_12065 PS417_12070 PS417_12075 PS417_12080 PS417_12085
carbon source Gly-Glu (C) -0.2 N.D. -1.1 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. -0.8 N.D. +0.1
carbon source Gly-Glu (C) -0.2 N.D. -1.1 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 N.D. -0.5 N.D. -0.4
stress Dimethyl Sulfoxide 5 vol% -0.3 N.D. -0.5 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 N.D. -1.2 N.D. +0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -1.2 N.D. -0.1
carbon source Inosine (C) -0.1 N.D. -1.2 N.D. +0.2
solid stress Fraxetin 3 mM; solid stress +0.1 N.D. -0.9 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 N.D. -1.7 N.D. +0.8
phage JP1 MOI 10 +0.4 N.D. -0.9 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. -0.6 N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. -0.9 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. -1.0 N.D. +0.4
carbon source D-Ribose (C) +0.4 N.D. -1.0 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. -0.7 N.D. +0.4
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 N.D. -0.6 N.D. -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 N.D. +0.7 N.D. -0.2
carbon source L-Valine (C) +0.4 N.D. -0.7 N.D. +0.2
soil soil sample 8; outgrowth in LB -0.4 N.D. +0.7 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. -0.8 N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.6 N.D. +0.4
carbon source Xylitol (C) -1.7 N.D. +1.6 N.D. +0.4
carbon source Xylitol (C) -1.8 N.D. +2.3 N.D. +0.3
soil soil sample 3; outgrowth in LB +0.1 N.D. +1.0 N.D. -0.2
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +0.1 N.D. +1.1 N.D. -0.1
seeds Growth on radish seeds for 72 hours +0.3 N.D. +0.7 N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 N.D. +0.5 N.D. +0.2
root root sample 6; outgrowth in LB +0.2 N.D. +1.0 N.D. +0.6
supernatant LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.1 N.D. +2.6 N.D. +0.0
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