Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_12045	PS417_12050	PS417_12055	PS417_12060	PS417_12065
carbon source	Xylitol (C)	-0.9	-1.7	-1.6	-1.6	-1.8
carbon source	Xylitol (C)	-0.9	-1.2	-1.3	-1.8	-1.7
supernatant control	Vogels_fungal_media; pH 5.5	-0.0	-0.5	-0.6	-0.6	+0.0
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	-0.5	-0.4	-0.2	+0.1	-0.5
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.4	-0.5	-0.4	-0.6	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-0.2	-0.3	-0.8	-0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.4	-0.8	+0.0	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	-0.8	+0.5	-0.5	-0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.0	+0.2	-0.8	-0.6	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.6	+0.5	-0.2	-0.2
motility	outer cut, LB soft agar motility assay	+0.0	-1.2	+0.2	-0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.4	+0.6	-0.4	-0.1
carbon source	L-Valine (C)	-0.1	+0.7	-0.8	-0.0	-0.5
stress	Cisplatin 0.01 mg/ml	+0.5	-0.5	-0.1	-0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.2	+0.5	-0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	-0.3	+0.5	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.8	-0.7	-0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.5	+0.2	+0.3	-0.4
phage	P. simiae OR Antrim MOI 1	+0.0	-0.7	+0.7	+0.2	+0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.6	+0.4	+0.2	-0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.1	+0.7	+0.1	+0.3
carbon source	2'-Deoxyinosine 5 mM (C)	+0.8	-0.3	-0.3	+0.4	+0.4
stress	methylglyoxal 0.032 vol%	+0.2	-0.4	+1.2	-0.0	+0.1
carbon source	L-Valine (C)	+0.3	-0.3	+0.7	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.3	+0.6	+0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.0	+0.3	+0.7	+0.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.1	+1.1	+0.8	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	+0.5	+0.0	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	+0.1	+0.6	-0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7	+0.4	-0.3	+0.7	+0.1