Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_12035	PS417_12040	PS417_12045	PS417_12050	PS417_12055
carbon source	Xylitol (C)	-2.6	-1.9	-0.9	-1.7	-1.6
carbon source	Xylitol (C)	-1.0	-1.7	-0.9	-1.2	-1.3
phage	JP1 MOI 0.1	-1.5	-0.5	+0.2	+0.0	-0.5
carbon source	L-Valine (C)	-2.2	+0.2	-0.1	+0.7	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.2	-0.6	+0.1	+0.2
phage	P. simiae OR Antrim MOI 1	-1.2	-0.3	-0.1	+0.2	-0.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	-1.6	+0.0	-0.1	-0.3	+0.6
phage	P. simiae ORA MOI 0.1	-1.0	+0.3	+0.1	-0.7	+0.1
seeds	Growth on radish seeds for 72 hours	-1.2	+0.3	+0.2	-0.2	-0.3
solid stress	Fraxetin 3 mM; solid stress	-1.3	+0.0	-0.0	-0.5	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	-0.6	-0.4	+0.6
stress	Cisplatin 0.01 mg/ml	-0.6	-0.2	+0.5	-0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.3	+0.2	-0.4	-0.8
stress	Phosphomycin 0.002 mg/ml	-0.6	+0.2	+0.5	-0.6	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.1	-0.4	+0.2	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	-0.2	+0.4	+0.3	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.2	-0.7	-0.6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	-0.1	-0.3	+0.8	-0.7
supernatant control	Vogels_fungal_media 0.1X	+0.4	+0.2	+0.6	-0.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+0.0	-0.1	-0.1	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-0.2	+0.2	+0.4	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.2	+0.9	+0.1	+0.3
soil	soil sample 4; outgrowth in LB	+0.9	-0.0	-0.2	+0.6	-0.6
phage	JP1 MOI 10	+1.0	-0.2	+0.2	-0.3	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.1	+0.1	+0.0	-0.8	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.2	+1.7	+0.4	-0.3
carbon source	L-Valine (C)	+0.1	+0.5	+0.3	-0.3	+0.7
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+1.2	+0.2	+0.4	-0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.2	+1.0	+0.3	+0.7
stress	methylglyoxal 0.032 vol%	+0.6	+0.3	+0.2	-0.4	+1.2