Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_12000	PS417_12005	PS417_12010	PS417_12015	PS417_12020
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-6.0	N.D.	-1.3	+0.0
root	root sample 6; outgrowth in LB	N.D.	-5.1	N.D.	-0.8	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.9	N.D.	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.9	N.D.	+0.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.4	N.D.	-1.7	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.0	N.D.	-1.2	-0.3
carbon source	L-Valine (C)	N.D.	-1.2	N.D.	-0.7	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-2.0	N.D.	-0.3	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-1.8	N.D.	-0.2	-0.1
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-1.1	N.D.	-0.6	-0.4
liquid stress	Scopoletin 3 mM; liquid stress	N.D.	-1.7	N.D.	-0.3	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-2.1	N.D.	+0.9	-0.5
soil	soil sample 4; outgrowth in LB	N.D.	-1.8	N.D.	+0.4	-0.2
carbon source	L-Valine (C)	N.D.	-1.3	N.D.	-0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.3	N.D.	+0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-1.1	N.D.	-0.6	+0.3
nophagecontrol	Only library	N.D.	-1.3	N.D.	+0.4	-0.0
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	N.D.	+0.4	N.D.	-1.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	N.D.	+0.5	-0.9
phage	P. simiae OR Antrim MOI 10	N.D.	-1.1	N.D.	+0.5	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	N.D.	-1.2	N.D.	+0.3	+0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	-1.2	N.D.	+0.3	+0.3
stress	methylglyoxal 0.032 vol%	N.D.	+0.3	N.D.	-1.1	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.9	N.D.	-0.5	+1.0
seeds	Growth on radish seeds for 72 hours	N.D.	-1.4	N.D.	+1.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.6	N.D.	+0.9	-0.5
seeds	Growth on radish seeds for 24 hours	N.D.	-0.9	N.D.	+0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.0	N.D.	+0.9	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-1.1	N.D.	+1.5	+0.2
phage	P. simiae OR Antrim MOI 10	N.D.	+1.6	N.D.	+0.7	-0.0