Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11935	PS417_11940	PS417_11945	PS417_11950	PS417_11955
solid stress	Fraxetin 3 mM; solid stress	-0.4	-1.4	-2.1	+0.3	+0.4
solid stress	Fraxetin 2 mM; solid stress	-0.2	-1.1	-1.9	-0.1	+0.2
solid stress	Fraxetin 2 mM; solid stress	-0.0	-1.2	-0.6	-1.1	-0.0
root	root sample 6; outgrowth in LB	-0.7	+0.1	-0.5	-1.7	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.3	-0.9	-2.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.3	-1.6	-1.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.1	-1.3	-0.8	-0.0
solid stress	Fraxetin 0.5 mM; solid stress	+0.0	-0.8	-1.5	+0.2	+0.0
phage	P. simiae Grant Run MOI 10	+0.1	+0.0	-0.6	-1.5	-0.0
solid stress	Fraxetin 2 mM; solid stress	+0.0	-1.1	-1.2	+0.2	+0.1
solid stress	Fraxetin 3 mM; solid stress	-0.2	-0.9	-0.9	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.2	-1.0	-1.0	+0.2
solid stress	Fraxetin 3 mM; solid stress	+0.0	-1.0	-0.7	-0.4	+0.4
solid stress	Fraxetin 1 mM; solid stress	+0.1	-0.8	-1.4	+0.4	+0.1
solid stress	Fraxetin 1 mM; solid stress	+0.2	-0.8	-1.3	+0.4	-0.1
stress	methylglyoxal 0.032 vol%	-0.8	+0.4	-0.6	-0.5	+0.2
phage	JP1 MOI 10	+0.2	+0.2	-1.4	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.1	-1.2	+0.8	+0.1
liquid stress	Fraxetin 3 mM; liquid stress	-0.2	-0.3	-0.8	+0.5	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-0.4	-1.0	+0.9	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.2	-0.9	+1.1	-0.0
seeds	Growth on radish seeds for 72 hours	+0.3	+0.1	+1.0	-1.5	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	-1.5	+1.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	+0.2	+0.3	-1.3	+0.3
phage	Wcs_1	-0.8	+0.0	+0.1	+1.5	-0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.2	+0.3	+1.1	-0.5	-0.2
solid stress	80% Methanol 2 mM; solid stress	+0.1	-0.1	-0.3	+2.0	+0.0
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.3	+0.1	+1.2	+0.8	-0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.7	+0.3	+1.3	+0.3	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.1	-0.5	+3.2	+0.1