Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2339 and GFF2340 are separated by 213 nucleotidesGFF2340 and GFF2341 are separated by 120 nucleotidesGFF2341 and GFF2342 overlap by 4 nucleotidesGFF2342 and GFF2343 are separated by 5 nucleotides GFF2339 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 389,545 to 391,032 GFF2339 GFF2340 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 391,246 to 392,739 GFF2340 GFF2341 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 392,860 to 393,690 GFF2341 GFF2342 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 393,687 to 394,676 GFF2342 GFF2343 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 394,682 to 395,557 GFF2343
Group Condition GFF2339 GFF2340 GFF2341 GFF2342 GFF2343
complex community Community=guar; Passage=4 -0.2 -0.2 -4.4 -1.4 -0.6
complex community Community=guar; Passage=4 -0.5 +0.2 -4.6 +0.5 -0.2
complex community Community=arabino-guar; Passage=4 -0.5 -0.1 -0.5 -1.5 -2.0
complex community Community=guar; Passage=4 -0.1 -0.6 -2.7 -0.4 -0.5
phage phage_bap4 -0.3 -0.2 -1.4 -0.9 -1.1
complex community Community=arabino-guar; Passage=4 -0.8 +0.0 -1.1 -0.6 -1.4
no phage control no phage control -0.2 -0.2 -1.1 -0.7 -1.4
complex community Community=arabino-guar; Passage=4 +0.1 -0.5 -2.9 +0.3 -0.3
complex community Community=arabino-guar; Passage=4 -0.2 -0.3 -1.4 -1.1 -0.1
no phage control no phage control -0.1 -0.2 -1.3 -0.6 -1.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 +0.0 -2.1 +0.1 -1.0
phage phage_bap4 -0.1 -0.2 -0.9 -0.9 -0.9
no phage control no phage control -0.3 +0.0 -0.6 -0.5 -1.4
phage phage_bap4 -0.2 -0.1 -1.2 -0.5 -0.8
no phage control no phage control -0.4 -0.1 -0.7 -0.4 -1.0
complex community Community=Locust bean gum; Passage=1 -0.0 +0.0 -1.2 -0.8 -0.4
phage phage_bap4 -0.3 -0.2 -0.3 -0.4 -1.1
complex community Community=Locust bean gum; Passage=4 -0.3 -0.4 +0.2 -0.8 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.2 -1.7 +0.2 -0.2
vitamin M9 with Supernatant from Cyptococcus -0.4 -0.3 -0.1 -0.4 -0.7
complex community Community=Kojac gum; Passage=4 -0.7 -0.2 -0.6 +0.3 -0.7
vitamin M9 with Supernatant from Cyptococcus -0.4 -0.3 -0.4 -0.2 -0.5
complex community Community=Locust bean gum; Passage=4 +0.1 -0.3 -0.5 -0.2 -0.8
complex community Community=Kojac gum; Passage=1 -0.3 -0.2 -0.2 +0.0 -0.9
vitamin M9 with Supernatant from Cyptococcus -0.4 -0.3 -0.8 +0.4 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.4 -0.1 -1.0 +0.4 +0.1
complex community Community=Locust bean gum; Passage=4 -0.2 -0.5 +0.6 -0.4 -0.4
vitamin M9 with Supernatant from Cyptococcus -0.4 +0.0 +0.5 +0.4 -0.9
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.2 +0.7 +0.4 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 +0.1 +1.1 +0.5 -0.1
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