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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2339 and GFF2340 are separated by 213 nucleotides
GFF2340 and GFF2341 are separated by 120 nucleotides
GFF2341 and GFF2342 overlap by 4 nucleotides
GFF2342 and GFF2343 are separated by 5 nucleotides
GFF2339 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 389,545 to 391,032
GFF2339
GFF2340 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 391,246 to 392,739
GFF2340
GFF2341 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 392,860 to 393,690
GFF2341
GFF2342 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 393,687 to 394,676
GFF2342
GFF2343 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 394,682 to 395,557
GFF2343
Group
Condition
GFF2339
GFF2340
GFF2341
GFF2342
GFF2343
complex community
Community=guar; Passage=4
-0.2
-0.2
-4.4
-1.4
-0.6
complex community
Community=guar; Passage=4
-0.5
+0.2
-4.6
+0.5
-0.2
complex community
Community=arabino-guar; Passage=4
-0.5
-0.1
-0.5
-1.5
-2.0
complex community
Community=guar; Passage=4
-0.1
-0.6
-2.7
-0.4
-0.5
phage
phage_bap4
-0.3
-0.2
-1.4
-0.9
-1.1
complex community
Community=arabino-guar; Passage=4
-0.8
+0.0
-1.1
-0.6
-1.4
no phage control
no phage control
-0.2
-0.2
-1.1
-0.7
-1.4
complex community
Community=arabino-guar; Passage=4
+0.1
-0.5
-2.9
+0.3
-0.3
complex community
Community=arabino-guar; Passage=4
-0.2
-0.3
-1.4
-1.1
-0.1
no phage control
no phage control
-0.1
-0.2
-1.3
-0.6
-1.0
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
+0.0
-2.1
+0.1
-1.0
phage
phage_bap4
-0.1
-0.2
-0.9
-0.9
-0.9
no phage control
no phage control
-0.3
+0.0
-0.6
-0.5
-1.4
phage
phage_bap4
-0.2
-0.1
-1.2
-0.5
-0.8
no phage control
no phage control
-0.4
-0.1
-0.7
-0.4
-1.0
complex community
Community=Locust bean gum; Passage=1
-0.0
+0.0
-1.2
-0.8
-0.4
phage
phage_bap4
-0.3
-0.2
-0.3
-0.4
-1.1
complex community
Community=Locust bean gum; Passage=4
-0.3
-0.4
+0.2
-0.8
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.2
-1.7
+0.2
-0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.4
-0.3
-0.1
-0.4
-0.7
complex community
Community=Kojac gum; Passage=4
-0.7
-0.2
-0.6
+0.3
-0.7
vitamin
M9 with Supernatant from Cyptococcus
-0.4
-0.3
-0.4
-0.2
-0.5
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.3
-0.5
-0.2
-0.8
complex community
Community=Kojac gum; Passage=1
-0.3
-0.2
-0.2
+0.0
-0.9
vitamin
M9 with Supernatant from Cyptococcus
-0.4
-0.3
-0.8
+0.4
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.4
-0.1
-1.0
+0.4
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.5
+0.6
-0.4
-0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.4
+0.0
+0.5
+0.4
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.2
+0.7
+0.4
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.1
+1.1
+0.5
-0.1
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