Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11860	PS417_11865	PS417_11870	PS417_11875	PS417_11880
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-4.4	-2.4	-4.4	-4.4	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-4.9	-2.2	-4.2	-4.3	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-3.5	-3.8	-4.6	-2.8	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-3.2	-3.6	-2.8	-2.3	+0.2
carbon source	m-Inositol (C)	-3.2	-2.9	-3.0	-3.0	+0.3
carbon source	m-Inositol (C)	-2.5	-2.8	-3.0	-3.4	+0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.6	-2.2	-2.3	-2.7	+0.5
stress	Gentamicin 0.008 mg/ml	-0.1	-0.2	-0.6	-1.1	-1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	-1.6	-0.8	-0.2	+0.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	-2.3	-0.0	-0.1	+0.7
carbon source	2'-Deoxyinosine 5 mM (C)	+0.6	-1.9	+0.1	+0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.8	-0.5	-0.2	+1.1
phage	JP1 MOI 10	-0.2	-1.9	+0.2	+0.2	+0.7
stress	Doxycycline hyclate 0.001 mg/ml	+0.7	+0.5	-0.0	+0.5	-1.4
soil	soil sample 8; outgrowth in LB	+0.8	-0.7	+0.2	+0.7	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+1.7	-0.1	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+1.0	-0.2	-0.7	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	+0.5	+0.3	-0.5	+1.2
carbon source	RCH2_defined_glucose with MS_media 1x	-0.3	+0.8	+0.3	+0.6	-0.7
phage	P. simiae Grant Run MOI 0.1	+0.5	-1.4	+0.5	+0.3	+0.9
phage	P. simiae OR Antrim MOI 10	+0.2	-1.2	+0.5	+0.8	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.7	-0.1	+0.1	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+1.0	-0.1	+0.7	-0.3
stress	Choline chloride 300 mM	+0.5	+0.3	+0.4	+0.8	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+0.6	+0.6	+0.8	+0.2
phage	P. simiae OR Antrim MOI 0.1	+0.5	-0.0	+0.4	+1.0	+1.4
seeds	Growth on radish seeds for 72 hours	+0.3	+1.2	+0.1	+0.3	+1.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+2.3	+0.7	+0.3	+0.8
phage	P. simiae OR1 MOI 0.1	+1.0	+0.9	+0.5	+0.6	+0.8
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.5	+0.5	+1.0	+1.4	+2.0