Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11845	PS417_11850	PS417_11855	PS417_11860	PS417_11865
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-4.4	-4.5	-4.9	-2.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-4.0	-4.4	-4.4	-2.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-3.5	-4.3	-3.5	-3.8
carbon source	m-Inositol (C)	+0.2	-3.6	-2.8	-3.2	-2.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-2.3	-3.2	-3.2	-3.6
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-3.6	-3.2	-2.6	-2.2
carbon source	m-Inositol (C)	+0.1	-2.7	-3.0	-2.5	-2.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-0.0	-0.4	-1.2	-1.6
carbon source	Inosine (C)	-2.8	-0.0	-0.4	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.4	-0.4	-0.9	-0.6	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	-2.3	+0.3	-0.5	+0.5	-0.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.3	+0.0	-0.3	+0.0	-2.3
carbon source	Gly-Glu (C)	-2.4	+0.1	-0.4	-0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.2	-0.1	-0.2	-0.8
carbon source	Gly-Glu (C)	-2.9	+0.1	+0.3	+0.3	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-1.0	+0.3	-0.1	+0.6	-1.9
carbon source	Inosine (C)	-2.5	+0.1	-0.3	+0.1	+0.3
soil	soil sample 4; outgrowth in LB	-1.4	+0.5	-0.1	+0.1	-0.8
carbon source	L-Valine (C)	-1.5	+0.5	+0.4	-0.4	-0.7
soil	soil sample 3; outgrowth in LB	-1.4	-0.6	+0.5	+0.2	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-0.6	+0.4	+0.1	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	-0.1	+0.2	+0.3	+1.2
phage	P. simiae Grant Run MOI 0.1	+0.9	+0.3	+0.4	+0.5	-1.4
phage	P. simiae OR Antrim MOI 10	+0.5	+0.8	+0.6	+0.2	-1.2
phage	P. simiae OR Antrim MOI 1	+1.1	+0.5	-0.1	+0.5	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.3	-0.4	-0.4	+2.3
phage	P. simiae OR Antrim MOI 10	+1.3	+0.2	+0.3	+0.8	-0.5
phage	P. simiae OR1 MOI 0.1	+0.7	-0.3	+1.0	+1.0	+0.9
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+2.3	+0.3	+1.0	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+1.4	+2.0	+0.8	+0.6