Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF230 and GFF231 are separated by 62 nucleotidesGFF231 and GFF232 are separated by 45 nucleotidesGFF232 and GFF233 are separated by 206 nucleotidesGFF233 and GFF234 are separated by 37 nucleotides GFF230 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 258,600 to 259,382 GFF230 GFF231 - DNA ligase (ATP) (EC 6.5.1.1), at 259,445 to 260,287 GFF231 GFF232 - Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18), at 260,333 to 262,639 GFF232 GFF233 - Putative activity regulator of membrane protease YbbK, at 262,846 to 263,271 GFF233 GFF234 - Protein QmcA (possibly involved in integral membrane quality control), at 263,309 to 264,238 GFF234
Group Condition GFF230 GFF231 GFF232 GFF233 GFF234
no phage control no phage control N.D. -0.2 -2.0 -0.3 -0.1
phage phage_bap4 N.D. -0.0 -0.7 -1.2 -0.1
no phage control no phage control N.D. +0.1 -1.6 -0.6 +0.0
phage phage_bap4 N.D. -0.0 -1.9 -0.0 -0.1
phage phage_bap4 N.D. -0.1 -1.4 -0.1 -0.1
phage phage_bap4 N.D. +0.1 -1.4 -0.4 +0.0
complex community Community=Kojac gum; Passage=4 N.D. -0.8 -0.9 -0.2 +0.3
phage phage_bap4 N.D. -0.0 -1.1 -0.3 -0.0
no phage control no phage control N.D. +0.2 -1.4 -0.3 -0.1
phage phage_bap4 N.D. -0.0 -1.4 +0.2 -0.2
phage phage_bap4 N.D. +0.3 -1.5 -0.2 +0.0
phage phage_bap4 N.D. -0.4 -0.9 +0.1 -0.3
phage phage_bap4 N.D. +0.0 -0.8 -0.1 -0.4
no phage control no phage control N.D. +0.3 -1.5 -0.0 -0.1
complex community Community=arabino-guar; Passage=4 N.D. -0.3 -1.1 +0.6 -0.5
complex community Community=arabino-guar; Passage=4 N.D. -0.4 -1.0 +0.0 +0.2
phage phage_bap4 N.D. +0.3 -1.1 -0.1 -0.1
complex community Community=guar; Passage=4 N.D. +0.2 -1.2 +0.2 +0.0
complex community Community=guar; Passage=4 N.D. -0.3 -1.2 +0.8 +0.1
complex community Community=guar; Passage=4 N.D. +0.3 -1.1 +0.1 +0.3
complex community Community=Locust bean gum; Passage=4 N.D. +0.2 -1.0 +0.2 +0.2
complex community Community=arabino-guar; Passage=4 N.D. -0.1 -1.0 +0.0 +0.7
complex community Community=arabino-guar; Passage=4 N.D. +0.3 -1.2 +0.7 +0.0
complex community Community=guar; Passage=4 N.D. +0.3 -1.0 +0.2 +0.5
complex community Community=Locust bean gum; Passage=4 N.D. +0.1 -0.9 +0.7 +0.0
complex community Community=Locust bean gum; Passage=4 N.D. +0.7 -1.0 +0.6 +0.0
complex community Community=Locust bean gum; Passage=4 N.D. +0.6 -0.9 +0.6 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.3 +0.4 +0.3 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. -0.2 +0.5 +0.3 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.6 +0.6 +0.0 +0.2
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