Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_11800	PS417_11805	PS417_11810	PS417_11815	PS417_11820
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.0	+0.2	+0.3	-0.7	-7.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	+0.0	+0.2	-0.1	-6.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+0.0	-0.2	+0.1	-3.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.7	-0.1	-0.1	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.3	-1.2	+0.2	-0.4
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	-0.2	+0.5	-0.8	-0.4	-0.6
stress	methylglyoxal 0.032 vol%	+0.0	-1.1	+0.5	+0.2	-0.7
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.1	+0.2	-1.7	-0.2	+0.4
phage	P. simiae OR Antrim MOI 0.1	+0.2	+0.5	-1.1	+0.3	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	-0.8	-0.9	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.2	-1.2	-0.2	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	-1.0	-0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.4	-1.1	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.1	+0.4	+0.5	-1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	-0.5	-0.3	+0.5	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.8	+0.6	-0.5	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.1	-0.1	-0.9	-0.0	+1.5
stress	Cisplatin 0.01 mg/ml	-0.6	-0.4	+1.0	+0.4	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	+0.5	-0.7	-0.1	+1.3
seeds	Growth on radish seeds for 72 hours	-0.4	+0.4	+0.5	+0.8	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.0	+0.5	-0.9	+0.0	+1.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.2	+0.1	-0.4	-0.2	+1.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.3	+0.2	-1.1	+0.1	+1.7
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	+0.8	-1.3	+0.1	+1.5
stress	Phosphomycin 0.003 mg/ml	+0.1	+0.9	+1.1	-0.4	-0.3
phage	JP1 MOI 1	-0.4	+0.3	+0.6	+0.4	+0.7
root	root sample 6; outgrowth in LB	-0.6	+0.6	+1.7	+0.0	-0.0
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.1	+0.2	+0.4	-0.1	+1.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	+0.9	+0.9	-0.2	+1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	+0.1	+0.5	+0.1	+2.6